Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029199 Camellia sinensis var. sinensis HOM05D005453 ORTHO05D006520 0.0e+00 1115.5 623 100.0
Actinidia19854 Actinidia chinensis HOM05D005453 ORTHO05D006520 1.3e-138 497.7 644 50.5
Dinv34193 Davidia involucrata HOM05D005453 ORTHO05D006520 3.0e-138 496.5 592 53.2
Rhsim12G0129300 Rhododendron simsii HOM05D005453 ORTHO05D006520 1.6e-128 464.2 632 48.6
Hma1.2p1_0265F.1_g106550 Hydrangea macrophylla HOM05D005453 ORTHO05D006520 2.3e-114 417.2 562 47.7
vmacro16321 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 5.6e-113 412.5 525 50.9
Ciclev10031079m.g Citrus clementina HOM05D005453 ORTHO05D006520 3.3e-105 386.7 595 44.0
QL03p065960 Quercus lobata HOM05D005453 ORTHO05D006520 2.4e-103 380.6 582 44.3
Cfa009044 Carpinus fangiana HOM05D005453 ORTHO05D006520 4.9e-101 372.9 563 45.1
Manes.01G191800 Manihot esculenta HOM05D005453 ORTHO05D006520 4.9e-101 372.9 650 40.3
Haze_12074 Corylus avellana HOM05D005453 ORTHO05D006520 4.2e-100 369.8 562 44.3
Prupe.1G266900 Prunus persica HOM05D005453 ORTHO05D006520 2.7e-99 367.1 585 42.6
DCAR_031056 Daucus carota HOM05D005453 ORTHO05D006520 3.0e-98 363.6 591 41.1
Nitab4.5_0002382g0040 Nicotiana tabacum HOM05D005453 ORTHO05D006520 6.7e-98 362.5 642 39.9
Oeu011701.1 Olea europaea HOM05D005453 ORTHO05D006520 1.6e-96 357.8 571 42.2
Nitab4.5_0000679g0110 Nicotiana tabacum HOM05D005453 ORTHO05D006520 1.4e-95 354.8 582 41.9
Nitab4.5_0002291g0010 Nicotiana tabacum HOM05D005453 ORTHO05D006520 5.3e-95 352.8 653 38.6
Sabra08G0147800 Salix brachista HOM05D005453 ORTHO05D006520 6.9e-95 352.4 605 40.5
MSTRG.666 Avicennia marina HOM05D005453 ORTHO05D006520 2.0e-94 350.9 640 38.9
Peaxi162Scf00209g00610 Petunia axillaris HOM05D005453 ORTHO05D006520 3.4e-94 350.1 564 41.1
Nitab4.5_0002969g0050 Nicotiana tabacum HOM05D005453 ORTHO05D006520 2.2e-93 347.4 593 40.5
Potri.010G034600 Populus trichocarpa HOM05D005453 ORTHO05D006520 3.8e-93 346.7 584 40.8
CiPaw.05G140600 Carya illinoinensis HOM05D005453 ORTHO05D006520 4.2e-92 343.2 545 43.3
RcHm_v2.0_Chr4g0440791 Rosa chinensis HOM05D005453 ORTHO05D006520 9.3e-92 342.0 568 41.9
Potri.008G194300 Populus trichocarpa HOM05D005453 ORTHO05D006520 1.0e-90 338.6 581 40.4
Nn4g23024 Nelumbo nucifera HOM05D005453 ORTHO05D006520 3.0e-90 337.0 569 40.9
MD13G1079900 Malus domestica HOM05D005453 ORTHO05D006520 1.1e-89 335.1 653 38.9
Oeu057176.2 Olea europaea HOM05D005453 ORTHO05D006520 1.5e-89 334.7 501 45.1
FAN22G2419 Fragaria x ananassa HOM05D005453 ORTHO05D006520 1.3e-88 331.6 584 40.9
PGSC0003DMG400017617 Solanum tuberosum HOM05D005453 ORTHO05D006520 2.2e-88 330.9 587 38.7
FvH4_4g32100 Fragaria vesca HOM05D005453 ORTHO05D006520 2.8e-88 330.5 562 40.7
FAN12G1353 Fragaria x ananassa HOM05D005453 ORTHO05D006520 4.8e-88 329.7 565 40.5
PGR102G2554 Punica granatum HOM05D005453 ORTHO05D006520 4.8e-88 329.7 552 41.7
Solyc05g006930.3 Solanum lycopersicum HOM05D005453 ORTHO05D006520 6.3e-88 329.3 598 38.3
Actinidia08209 Actinidia chinensis HOM05D005453 ORTHO05D006520 1.4e-87 328.2 405 55.3
Duzib268G1123 Durio zibethinus HOM05D005453 ORTHO05D006520 1.2e-86 325.1 560 41.2
Thecc.02G232200 Theobroma cacao HOM05D005453 ORTHO05D006520 1.2e-86 325.1 565 41.1
Sabra10G0030200 Salix brachista HOM05D005453 ORTHO05D006520 1.5e-86 324.7 615 38.5
Sc11g0001640 Simmondsia chinensis HOM05D005453 ORTHO05D006520 2.6e-86 323.9 571 40.1
Sopen05g002890 Solanum pennellii HOM05D005453 ORTHO05D006520 4.5e-86 323.2 584 38.7
COL.COLO4_34957 Corchorus olitorius HOM05D005453 ORTHO05D006520 5.9e-86 322.8 574 40.6
Peaxi162Scf00026g02226 Petunia axillaris HOM05D005453 ORTHO05D006520 7.7e-86 322.4 650 37.5
Gorai.005G189700 Gossypium raimondii HOM05D005453 ORTHO05D006520 1.7e-85 321.2 573 40.5
PGSC0003DMG400026781 Solanum tuberosum HOM05D005453 ORTHO05D006520 3.8e-85 320.1 565 38.2
AUR62026459 Chenopodium quinoa HOM05D005453 ORTHO05D006520 5.0e-85 319.7 554 39.4
ClCG05G024670 Citrullus lanatus HOM05D005453 ORTHO05D006520 1.1e-84 318.5 564 38.8
AUR62026269 Chenopodium quinoa HOM05D005453 ORTHO05D006520 1.4e-84 318.2 581 38.9
COL.COLO4_36184 Corchorus olitorius HOM05D005453 ORTHO05D006520 1.4e-84 318.2 573 40.1
CANSAT64G2233 Cannabis sativa HOM05D005453 ORTHO05D006520 2.5e-84 317.4 590 40.2
Gohir.D02G169300 Gossypium hirsutum HOM05D005453 ORTHO05D006520 7.2e-84 315.8 573 40.1
SGA_v2.0_scaffold163G38065 Striga asiatica HOM05D005453 ORTHO05D006520 9.4e-84 315.5 574 39.5
Glyma.02G022500 Glycine max HOM05D005453 ORTHO05D006520 3.6e-83 313.5 579 38.7
TWI75G0114 Tripterygium wilfordii HOM05D005453 ORTHO05D006520 6.1e-83 312.8 552 40.9
CAN.G27.11 Capsicum annuum HOM05D005453 ORTHO05D006520 1.0e-82 312.0 569 38.1
CsaV3_5G032260 Cucumis sativus L. HOM05D005453 ORTHO05D006520 1.0e-82 312.0 558 39.8
CAN.G827.6 Capsicum annuum HOM05D005453 ORTHO05D006520 1.8e-82 311.2 578 39.1
Nn3g17115 Nelumbo nucifera HOM05D005453 ORTHO05D006520 5.1e-82 309.7 660 35.9
Carub.0001s2390 Capsella rubella HOM05D005453 ORTHO05D006520 6.7e-82 309.3 580 37.6
MBI05_g12576_MAGBIO Magnolia biondii HOM05D005453 ORTHO05D006520 7.4e-81 305.8 562 38.6
Sopen01g006070 Solanum pennellii HOM05D005453 ORTHO05D006520 3.7e-80 303.5 575 37.7
AT1G27070 Arabidopsis thaliana HOM05D005453 ORTHO05D006520 4.8e-80 303.1 572 38.6
THA.LOC104822093 Tarenaya hassleriana HOM05D005453 ORTHO05D006520 1.4e-79 301.6 587 38.2
EL10Ac6g13139 Beta vulgaris HOM05D005453 ORTHO05D006520 1.8e-79 301.2 574 38.7
Glyma.01G041500 Glycine max HOM05D005453 ORTHO05D006520 2.4e-79 300.8 584 37.2
Hund05918 Selenicereus undatus HOM05D005453 ORTHO05D006520 6.9e-79 299.3 564 37.9
GSVIVG01020082001 Vitis vinifera HOM05D005453 ORTHO05D006520 9.1e-79 298.9 436 46.1
Migut.L01350 Erythranthe guttata HOM05D005453 ORTHO05D006520 1.5e-78 298.1 586 36.9
VMungo1215G2350 Vigna mungo HOM05D005453 ORTHO05D006520 2.0e-78 297.7 575 37.6
MELO3C012058.2 Cucumis melo HOM05D005453 ORTHO05D006520 3.4e-78 297.0 555 38.4
TPR.G29465 Trifolium pratense HOM05D005453 ORTHO05D006520 7.7e-78 295.8 572 37.8
Phvul.002G067500 Phaseolus vulgaris HOM05D005453 ORTHO05D006520 6.5e-77 292.7 585 37.3
Eucgr.B03405 Eucalyptus grandis HOM05D005453 ORTHO05D006520 1.9e-76 291.2 532 38.7
BcaB07g32384 Brassica carinata HOM05D005453 ORTHO05D006520 2.1e-75 287.7 547 38.8
Lalb_Chr10g0097931 Lupinus albus HOM05D005453 ORTHO05D006520 1.0e-74 285.4 546 38.6
SalBow2G2835 Salvia bowleyana HOM05D005453 ORTHO05D006520 1.0e-74 285.4 552 37.7
Sp1g21710 Schrenkiella parvula HOM05D005453 ORTHO05D006520 1.0e-74 285.4 585 36.1
Gohir.A03G146000 Gossypium hirsutum HOM05D005453 ORTHO05D006520 1.4e-74 285.0 514 39.9
PSO017G4002 Papaver somniferum HOM05D005453 ORTHO05D006520 5.2e-74 283.1 551 38.5
Medtr5g038210 Medicago truncatula HOM05D005453 ORTHO05D006520 1.1e-73 282.0 583 36.0
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 2.0e-73 281.2 542 37.8
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 2.0e-73 281.2 542 37.8
Cc11_g13580 Coffea canephora HOM05D005453 ORTHO05D006520 4.8e-72 276.6 409 43.5
Hund25276 Selenicereus undatus HOM05D005453 ORTHO05D006520 1.1e-71 275.4 623 35.5
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.8e-71 274.6 546 37.5
BolC5t31089H Brassica oleracea HOM05D005453 ORTHO05D006520 4.1e-71 273.5 546 37.5
Duzib248G1267 Durio zibethinus HOM05D005453 ORTHO05D006520 4.1e-71 273.5 509 38.3
TAR374G0997 Trochodendron aralioides HOM05D005453 ORTHO05D006520 4.1e-71 273.5 537 38.9
Ca_07371_v3 Cicer arietinum L. HOM05D005453 ORTHO05D006520 7.0e-71 272.7 596 35.2
MD16G1079800 Malus domestica HOM05D005453 ORTHO05D006520 9.1e-71 272.3 521 39.5
PSO478G0523 Papaver somniferum HOM05D005453 ORTHO05D006520 2.0e-70 271.2 555 37.7
Aqoxy3G03253 Aquilegia oxysepala HOM05D005453 ORTHO05D006520 5.5e-68 263.1 591 35.4
Aa31LG7G8080 Aethionema arabicum HOM05D005453 ORTHO05D006520 2.7e-67 260.8 525 37.0
Lj2g0004726 Lotus japonicus HOM05D005453 ORTHO05D006520 2.7e-67 260.8 581 36.1
Sed0006777 Sechium edule HOM05D005453 ORTHO05D006520 4.7e-67 260.0 557 34.1
Sed0004157 Sechium edule HOM05D005453 ORTHO05D006520 6.1e-67 259.6 499 36.5
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 8.0e-67 259.2 555 35.7
arahy.Tifrunner.gnm1.ann1.62035P Arachis hypogaea HOM05D005453 ORTHO05D006520 3.0e-66 257.3 549 36.8
arahy.Tifrunner.gnm1.ann1.7H81I7 Arachis hypogaea HOM05D005453 ORTHO05D006520 3.0e-66 257.3 551 36.5
ECA234G1124 Erigeron canadensis HOM05D005453 ORTHO05D006520 2.6e-65 254.2 544 36.6
Thhalv10007340m.g Eutrema salsugineum HOM05D005453 ORTHO05D006520 1.7e-64 251.5 546 35.9
Lsat_1_v5_gn_8_53620 Lactuca sativa HOM05D005453 ORTHO05D006520 1.4e-63 248.4 538 36.1
arahy.Tifrunner.gnm1.ann1.C864RN Arachis hypogaea HOM05D005453 ORTHO05D006520 1.0e-61 242.3 548 35.9
TAR622G1188 Trochodendron aralioides HOM05D005453 ORTHO05D006520 1.0e-61 242.3 400 42.2
Atru.chr11.1866 Acer truncatum HOM05D005453 ORTHO05D006520 2.5e-60 237.7 369 43.4
AL1G38420 Arabidopsis lyrata HOM05D005453 ORTHO05D006520 6.8e-58 229.6 590 32.4
unitig_22.g6530 Utricularia gibba HOM05D005453 ORTHO05D006520 1.1e-55 222.2 546 32.4
Os03g0686900 Oryza sativa ssp. japonica HOM05D005453 ORTHO05D006520 2.7e-54 217.6 555 33.5
BcaC05g26346 Brassica carinata HOM05D005453 ORTHO05D006520 5.9e-54 216.5 443 37.2
ATR0665G247 Amborella trichopoda HOM05D005453 ORTHO05D006520 1.5e-52 211.8 575 33.4
HanXRQChr08g0209161 Helianthus annuus HOM05D005453 ORTHO05D006520 1.2e-51 208.8 535 32.3
CARHR024830 Cardamine hirsuta HOM05D005453 ORTHO05D006520 4.9e-48 196.8 326 39.9
Zm00001eb217200 Zea mays HOM05D005453 ORTHO05D006520 4.1e-47 193.7 554 30.1
MSTRG.7832 Avicennia marina HOM05D005453 ORTHO05D006520 1.6e-46 191.8 149 67.1
FAN07G1475 Fragaria x ananassa HOM05D005453 ORTHO05D006520 7.8e-46 189.5 356 39.3
CDE06G1042 Ceratophyllum demersum HOM05D005453 ORTHO05D006520 8.6e-45 186.0 553 29.5
Psat2g125480 Pisum sativum HOM05D005453 ORTHO05D006520 5.6e-44 183.3 478 34.7
Solyc01g010460.4 Solanum lycopersicum HOM05D005453 ORTHO05D006520 8.9e-42 176.0 341 37.5
Zm00001eb053230 Zea mays HOM05D005453 ORTHO05D006520 3.9e-37 160.6 483 30.2
Atru.chr11.1865 Acer truncatum HOM05D005453 ORTHO05D006520 5.6e-36 156.8 128 64.8
Cpa.g.c42295 Carica papaya HOM05D005453 ORTHO05D006520 1.4e-34 152.1 98 77.6
Oeu026503.1 Olea europaea HOM05D005453 ORTHO05D006520 3.4e-33 147.5 223 43.9
SEGI_23512 Sequoiadendron giganteum HOM05D005453 ORTHO05D006520 2.9e-32 144.4 559 27.5
Solyc01g010470.2 Solanum lycopersicum HOM05D005453 ORTHO05D006520 1.4e-31 142.1 145 54.5
Sc04g0008480 Simmondsia chinensis HOM05D005453 ORTHO05D006520 2.4e-31 141.4 172 48.3
vmacro21820 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 7.0e-31 139.8 129 64.3
HPP92_018829 Vanilla planifolia HOM05D005453 ORTHO05D006520 3.9e-29 134.0 542 25.6
FAN07G0689 Fragaria x ananassa HOM05D005453 ORTHO05D006520 1.5e-25 122.1 201 42.8
CBR_g23347 Chara braunii HOM05D005453 ORTHO05D006520 4.6e-22 110.5 152 40.8
Cpa.g.sc1308.1 Carica papaya HOM05D005453 ORTHO05D006520 1.6e-19 102.1 89 57.3
Mapoly0020s0141 Marchantia polymorpha HOM05D005453 ORTHO05D006520 6.2e-19 100.1 669 23.0
SMO353G0350 Selaginella moellendorffii HOM05D005453 ORTHO05D006520 2.4e-18 98.2 114 42.1
HanXRQChr03g0092801 Helianthus annuus HOM05D005453 ORTHO05D006520 2.4e-15 88.2 86 51.2
AUR62041893 Chenopodium quinoa HOM05D008659 ORTHO05D010848 9.2e-15 86.3 131 46.6
HanXRQChr03g0092811 Helianthus annuus HOM05D005453 ORTHO05D006520 9.2e-15 86.3 80 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2704 Anthoceros agrestis HOM05D005453 ORTHO05D006520 6.6e-13 80.1 139 33.8
Cpa.g.c46071 Carica papaya HOM05D005453 ORTHO05D006520 1.9e-12 78.6 109 45.0
Lalb_Chr04g0256401 Lupinus albus HOM05D005453 ORTHO05D006520 3.1e-10 71.2 53 71.7
TPR.G23943 Trifolium pratense HOM05D005453 ORTHO05D006520 4.0e-10 70.9 49 63.3
Actinidia08210 Actinidia chinensis HOM05D005453 ORTHO05D006520 6.9e-10 70.1 68 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2026 Anthoceros agrestis HOM05D007148 ORTHO05D009047 2.2e-08 65.1 152 30.9
Duzib093G0361 Durio zibethinus HOM05D007148 ORTHO05D009047 5.4e-07 60.5 145 29.0
FAN14G3336 Fragaria x ananassa HOM05D007148 ORTHO05D009047 5.4e-07 60.5 198 27.3
Oeu001597.1 Olea europaea HOM05D005453 ORTHO05D006520 9.3e-07 59.7 32 81.2
FAN09G1323 Fragaria x ananassa HOM05D007148 ORTHO05D009047 1.6e-06 58.9 158 27.2
Glyma.10G054600 Glycine max HOM05D007148 ORTHO05D009047 1.6e-06 58.9 143 30.1
DCAR_014515 Daucus carota HOM05D007148 ORTHO05D009047 3.5e-06 57.8 151 25.8
CANSAT80G2677 Cannabis sativa HOM05D007148 ORTHO05D009047 6.0e-06 57.0 144 27.1
arahy.Tifrunner.gnm1.ann1.IRYX6E Arachis hypogaea HOM05D007148 ORTHO05D009047 7.8e-06 56.6 143 28.7
arahy.Tifrunner.gnm1.ann1.J3RTVJ Arachis hypogaea HOM05D007148 ORTHO05D009047 7.8e-06 56.6 143 28.7
CiPaw.09G171600 Carya illinoinensis HOM05D007148 ORTHO05D009047 7.8e-06 56.6 143 28.0


User provided reference genes

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