Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029028 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.6e-66 256.1 146 100.0
CSS0035071 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 3.9e-65 251.5 146 88.4
CSS0047509 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.1e-64 250.0 146 87.7
CSS0015116 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.6e-61 238.8 146 93.2
CSS0050269 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.1e-58 229.2 146 83.6
CSS0036493 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.5e-53 213.0 146 89.0
CSS0010138 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 4.6e-50 201.4 130 84.6
CSS0005489 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 1.2e-37 160.2 130 63.8
CSS0037529 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.0e-37 159.5 146 72.6
Oeu013830.1 Olea europaea HOM05D000570 ORTHO05D001174 1.3e-31 140.2 131 56.5
Hma1.2p1_0298F.1_g117490 Hydrangea macrophylla HOM05D000570 ORTHO05D001174 1.8e-30 136.3 133 69.2
Lj1A1235G87 Lonicera japonica HOM05D000570 ORTHO05D001174 5.9e-29 131.3 131 59.5
vmacro15803 Vaccinium macrocarpon HOM05D000570 ORTHO05D001174 6.5e-28 127.9 124 68.5
PGSC0003DMG400016709 Solanum tuberosum HOM05D000570 ORTHO05D001174 1.4e-27 126.7 131 58.0
CAN.G1014.44 Capsicum annuum HOM05D000570 ORTHO05D001174 3.2e-27 125.6 131 58.0
Solyc02g081070.4 Solanum lycopersicum HOM05D000570 ORTHO05D001174 9.4e-27 124.0 131 55.7
Sopen02g025740 Solanum pennellii HOM05D000570 ORTHO05D001174 9.4e-27 124.0 131 56.5
DCAR_024985 Daucus carota HOM05D000570 ORTHO05D001174 1.6e-26 123.2 132 65.2
GSVIVG01004806001 Vitis vinifera HOM05D000570 ORTHO05D001174 2.7e-26 122.5 130 60.8
Rhsim02G0105000 Rhododendron simsii HOM05D000570 ORTHO05D001174 8.8e-25 117.5 131 64.1
TAR626G0159 Trochodendron aralioides HOM05D000570 ORTHO05D001174 1.1e-24 117.1 131 53.4
Actinidia39260 Actinidia chinensis HOM05D000570 ORTHO05D001174 3.3e-24 115.5 130 61.5
Lsat_1_v5_gn_7_15161 Lactuca sativa HOM05D000570 ORTHO05D001174 4.8e-23 111.7 130 50.8
MSTRG.14627 Avicennia marina HOM05D000570 ORTHO05D001174 8.2e-23 110.9 130 50.8
Cc09_g01270 Coffea canephora HOM05D000570 ORTHO05D001174 3.1e-22 109.0 129 55.8
Duzib235G1179 Durio zibethinus HOM05D000570 ORTHO05D001174 5.3e-22 108.2 131 50.4
ECA236G0302 Erigeron canadensis HOM05D000570 ORTHO05D001174 7.0e-22 107.8 130 49.2
Cpa.g.sc152.51 Carica papaya HOM05D000570 ORTHO05D001174 1.2e-21 107.1 124 54.0
Nitab4.5_0012576g0010 Nicotiana tabacum HOM05D000570 ORTHO05D001174 3.4e-21 105.5 129 55.8
HanXRQChr05g0129311 Helianthus annuus HOM05D000570 ORTHO05D001174 4.5e-21 105.1 130 48.5
Atru.chr10.2275 Acer truncatum HOM05D000570 ORTHO05D001174 1.3e-20 103.6 126 47.6
COL.COLO4_31827 Corchorus olitorius HOM05D000570 ORTHO05D001174 2.9e-20 102.4 131 48.9
TPR.G12988 Trifolium pratense HOM05D000570 ORTHO05D001174 2.9e-20 102.4 126 50.0
HanXRQChr15g0470551 Helianthus annuus HOM05D000570 ORTHO05D001174 6.5e-20 101.3 130 51.5
Lalb_Chr20g0118921 Lupinus albus HOM05D000570 ORTHO05D001174 6.5e-20 101.3 125 47.2
Thecc.06G227500 Theobroma cacao HOM05D000570 ORTHO05D001174 6.5e-20 101.3 131 52.7
Gorai.010G183400 Gossypium raimondii HOM05D000570 ORTHO05D001174 1.1e-19 100.5 128 48.4
Ciclev10014418m.g Citrus clementina HOM05D000570 ORTHO05D001174 3.2e-19 99.0 129 56.6
Migut.H01588 Erythranthe guttata HOM05D000570 ORTHO05D001174 3.2e-19 99.0 130 46.2
Gohir.A06G150700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 5.5e-19 98.2 128 46.9
Gohir.D06G156900 Gossypium hirsutum HOM05D000570 ORTHO05D001174 7.2e-19 97.8 128 47.7
SGA_v2.0_scaffold89G27483 Striga asiatica HOM05D000570 ORTHO05D001174 7.2e-19 97.8 141 49.6
Nitab4.5_0001409g0210 Nicotiana tabacum HOM05D000570 ORTHO05D001174 9.4e-19 97.4 118 58.5
Sabra11G0008000 Salix brachista HOM05D000570 ORTHO05D001174 1.2e-18 97.1 121 48.8
MD10G1326000 Malus domestica HOM05D000570 ORTHO05D001174 2.1e-18 96.3 129 48.8
CANSAT56G2530 Cannabis sativa HOM05D000570 ORTHO05D001174 3.9e-17 92.0 130 46.9
MD05G1351900 Malus domestica HOM05D000570 ORTHO05D001174 3.9e-17 92.0 129 46.5
Peaxi162Scf00178g00216 Petunia axillaris HOM05D000570 ORTHO05D001174 3.9e-17 92.0 120 52.5
QL05p072009 Quercus lobata HOM05D000570 ORTHO05D001174 6.7e-17 91.3 128 45.3
Gohir.A10G011100 Gossypium hirsutum HOM05D000570 ORTHO05D001174 9.7e-16 87.4 131 51.9
PSO210G6440 Papaver somniferum HOM05D000570 ORTHO05D001174 1.7e-15 86.7 133 42.1
Potri.004G005301 Populus trichocarpa HOM05D000570 ORTHO05D001174 2.2e-15 86.3 124 46.8
Sc05g0009430 Simmondsia chinensis HOM05D000570 ORTHO05D001174 4.8e-15 85.1 130 48.5
Aqoxy1G03467 Aquilegia oxysepala HOM05D000570 ORTHO05D001174 6.3e-15 84.7 121 47.1
Lalb_Chr15g0087741 Lupinus albus HOM05D000570 ORTHO05D001174 1.1e-14 84.0 125 52.0
PSO832G2605 Papaver somniferum HOM05D000570 ORTHO05D001174 1.1e-14 84.0 133 40.6
Gorai.011G011800 Gossypium raimondii HOM05D000570 ORTHO05D001174 1.4e-14 83.6 131 52.7
Manes.16G003200 Manihot esculenta HOM05D000570 ORTHO05D001174 1.4e-14 83.6 105 49.5
Phvul.006G146100 Phaseolus vulgaris HOM05D000570 ORTHO05D001174 1.4e-14 83.6 125 46.4
Potri.011G010500 Populus trichocarpa HOM05D000570 ORTHO05D001174 1.8e-14 83.2 114 44.7
SGA_v2.0_scaffold49G18250 Striga asiatica HOM05D000570 ORTHO05D001174 7.0e-14 81.3 118 43.2
Glyma.15G111600 Glycine max HOM05D000570 ORTHO05D001174 1.2e-13 80.5 130 40.8
Os02g0190500 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 1.2e-13 80.5 135 38.5
QL02p081725 Quercus lobata HOM05D017261 ORTHO05D015793 1.6e-13 80.1 75 56.0
Gohir.D10G010700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 2.0e-13 79.7 131 50.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.5e-13 78.6 142 43.7
Zm00001eb234920 Zea mays HOM05D000570 ORTHO05D001174 4.5e-13 78.6 139 36.0
Hund21434 Selenicereus undatus HOM05D000570 ORTHO05D001174 5.9e-13 78.2 140 37.1
Lsat_1_v5_gn_0_22980 Lactuca sativa HOM05D000570 ORTHO05D001174 7.7e-13 77.8 116 44.0
TAR624G1309 Trochodendron aralioides HOM05D000570 ORTHO05D001174 1.0e-12 77.4 108 46.3
CsaV3_1G046110 Cucumis sativus L. HOM05D000570 ORTHO05D001174 1.3e-12 77.0 128 40.6
PGR004G0535 Punica granatum HOM05D000570 ORTHO05D001174 1.3e-12 77.0 121 42.1
Sabra04G0002700 Salix brachista HOM05D000570 ORTHO05D001174 1.3e-12 77.0 122 42.6
Ah.09g234550 Amaranthus hybridus HOM05D000570 ORTHO05D001174 2.9e-12 75.9 113 41.6
Haze_06852 Corylus avellana HOM05D000570 ORTHO05D001174 2.9e-12 75.9 112 46.4
FvH4_3g01460 Fragaria vesca HOM05D000570 ORTHO05D001174 2.9e-12 75.9 108 43.5
FAN21G0433 Fragaria x ananassa HOM05D000570 ORTHO05D001174 2.9e-12 75.9 108 43.5
MBI19_g45795_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D001174 3.8e-12 75.5 96 46.9
THA.LOC104813393 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 3.8e-12 75.5 126 40.5
Lj6g0005851 Lotus japonicus HOM05D000570 ORTHO05D001174 5.0e-12 75.1 125 52.0
CDE04G0812 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 6.5e-12 74.7 129 38.0
THA.LOC104812980 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 1.1e-11 73.9 125 40.0
RcHm_v2.0_Chr5g0002301 Rosa chinensis HOM05D000570 ORTHO05D001174 7.2e-11 71.2 116 45.7
TWI38G1871 Tripterygium wilfordii HOM05D000570 ORTHO05D001174 9.4e-11 70.9 110 50.9
ATR0686G143 Amborella trichopoda HOM05D000570 ORTHO05D015793 2.7e-10 69.3 138 35.5
VMungo0540G1870 Vigna mungo HOM05D000570 ORTHO05D001174 1.0e-09 67.4 125 46.4
Zm00001eb275550 Zea mays HOM05D000570 ORTHO05D001174 1.4e-09 67.0 135 36.3
Ca_00690_v3 Cicer arietinum L. HOM05D000570 ORTHO05D001174 1.8e-09 66.6 110 49.1
Medtr2g024330 Medicago truncatula HOM05D000570 ORTHO05D001174 3.0e-09 65.9 116 42.2
CiPaw.10G074100 Carya illinoinensis HOM05D000570 ORTHO05D001174 4.0e-09 65.5 110 40.9
CARHR044040 Cardamine hirsuta HOM05D000570 ORTHO05D001174 6.7e-09 64.7 125 37.6
RcHm_v2.0_Chr2g0148621 Rosa chinensis HOM05D000570 ORTHO05D001174 2.0e-08 63.2 113 37.2
CDE06G1424 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.4e-08 62.0 127 36.2
Hund05695 Selenicereus undatus HOM05D000570 ORTHO05D001174 4.4e-08 62.0 138 31.9
Thhalv10020162m.g Eutrema salsugineum HOM05D000570 ORTHO05D001174 5.7e-08 61.6 140 37.1
Prupe.4G015700 Prunus persica HOM05D000570 ORTHO05D001174 9.7e-08 60.8 115 42.6
BcaC05g29092 Brassica carinata HOM05D000570 ORTHO05D001174 1.3e-07 60.5 148 37.2
C05p53010 Brassica napus HOM05D000570 ORTHO05D001174 1.3e-07 60.5 148 37.2
BolC5t33981H Brassica oleracea HOM05D000570 ORTHO05D001174 1.3e-07 60.5 148 37.2
Hund23438 Selenicereus undatus HOM05D000570 ORTHO05D001174 1.3e-07 60.5 34 67.6
ATR0693G317 Amborella trichopoda HOM05D000570 ORTHO05D002740 2.2e-07 59.7 128 29.7
FAN25G3172 Fragaria x ananassa HOM05D000570 ORTHO05D001174 2.2e-07 59.7 108 40.7
HPP92_010491 Vanilla planifolia HOM05D000570 ORTHO05D001174 2.8e-07 59.3 83 53.0
CDE06G2079 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.8e-07 58.5 116 37.1
HPP92_012346 Vanilla planifolia HOM05D000570 ORTHO05D002740 4.8e-07 58.5 118 34.7
AL7G31560 Arabidopsis lyrata HOM05D000570 ORTHO05D001174 8.2e-07 57.8 107 38.3
Carub.0001s4301 Capsella rubella HOM05D000570 ORTHO05D001174 8.2e-07 57.8 147 33.3
Cfa000167 Carpinus fangiana HOM05D000570 ORTHO05D001174 8.2e-07 57.8 73 47.9
CiPaw.09G097400 Carya illinoinensis HOM05D000570 ORTHO05D001174 8.2e-07 57.8 111 36.0
SEGI_17819 Sequoiadendron giganteum HOM05D000570 ORTHO05D001174 1.4e-06 57.0 130 33.1
AT1G53730 Arabidopsis thaliana HOM05D000570 ORTHO05D001174 3.1e-06 55.8 120 36.7
Os07g0618400 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 3.1e-06 55.8 39 59.0
CDE07G0083 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.1e-06 55.5 116 37.9
AUR62021905 Chenopodium quinoa HOM05D000570 ORTHO05D001174 4.1e-06 55.5 137 31.4
CsaV3_3G031130 Cucumis sativus L. HOM05D000570 ORTHO05D001174 5.3e-06 55.1 126 32.5
Manes.11G011300 Manihot esculenta HOM05D000570 ORTHO05D001174 5.3e-06 55.1 40 57.5
Rhsim08G0251800 Rhododendron simsii HOM05D000570 ORTHO05D001174 5.3e-06 55.1 95 38.9
Sp1g40260 Schrenkiella parvula HOM05D000570 ORTHO05D001174 7.0e-06 54.7 40 60.0
ClCG08G004900 Citrullus lanatus HOM05D000570 ORTHO05D001174 9.1e-06 54.3 116 35.3
Thhalv10024563m.g Eutrema salsugineum HOM05D000570 ORTHO05D001174 9.1e-06 54.3 115 34.8
Manes.17G027800 Manihot esculenta HOM05D000570 ORTHO05D001174 9.1e-06 54.3 28 78.6
Nitab4.5_0002473g0060 Nicotiana tabacum HOM05D000570 ORTHO05D002740 9.1e-06 54.3 119 34.5


User provided reference genes

Program Settings