Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028993 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 8.0e-35 149.8 73 100.0
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 5.2e-18 94.0 54 83.3
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 5.7e-17 90.5 54 79.6
Hma1.2p1_1022F.1_g248750 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 7.5e-17 90.1 64 71.9
Hma1.2p1_1423F.1_g282650 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 7.5e-17 90.1 64 71.9
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 7.5e-17 90.1 54 79.6
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 1.4e-15 85.9 54 75.9
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 1.4e-15 85.9 54 77.8
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 2.4e-15 85.1 54 74.1
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 4.1e-15 84.3 54 75.9
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 4.1e-15 84.3 54 77.8
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 2.7e-14 81.6 54 70.4
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 2.7e-14 81.6 54 74.1
Lj9A687T82 Lonicera japonica HOM05D000306 ORTHO05D005993 7.8e-14 80.1 54 74.1
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 7.8e-14 80.1 54 70.4
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 1.3e-13 79.3 55 69.1
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 1.3e-13 79.3 54 70.4
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 1.3e-13 79.3 54 70.4
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 1.7e-13 79.0 54 68.5
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 1.7e-13 79.0 54 70.4
SEGI_33461 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 2.9e-13 78.2 54 66.7
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 3.9e-13 77.8 54 70.4
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 3.9e-13 77.8 54 68.5
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 3.9e-13 77.8 54 68.5
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 3.9e-13 77.8 54 66.7
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 5.0e-13 77.4 54 70.4
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 8.6e-13 76.6 54 72.2
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 8.6e-13 76.6 54 64.8
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 8.6e-13 76.6 54 72.2
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 8.6e-13 76.6 54 68.5
Cc06_g13480 Coffea canephora HOM05D000306 ORTHO05D005993 1.1e-12 76.3 54 70.4
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 1.1e-12 76.3 54 63.0
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 1.5e-12 75.9 54 66.7
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 1.5e-12 75.9 54 66.7
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 1.9e-12 75.5 54 66.7
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 2.5e-12 75.1 54 70.4
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 3.3e-12 74.7 54 68.5
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 4.3e-12 74.3 54 68.5
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 7.3e-12 73.6 54 68.5
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 7.3e-12 73.6 54 64.8
EL10Ac8g18271 Beta vulgaris HOM05D000306 ORTHO05D005993 9.5e-12 73.2 54 64.8
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 9.5e-12 73.2 54 64.8
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 1.2e-11 72.8 54 64.8
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 1.6e-11 72.4 54 63.0
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 1.6e-11 72.4 56 60.7
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 1.6e-11 72.4 54 63.0
Ah.09g229770 Amaranthus hybridus HOM05D000306 ORTHO05D005993 2.1e-11 72.0 54 63.0
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 2.1e-11 72.0 54 63.0
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 2.1e-11 72.0 57 64.9
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 2.1e-11 72.0 54 63.0
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 2.8e-11 71.6 54 64.8
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 2.8e-11 71.6 54 64.8
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 3.6e-11 71.2 54 63.0
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 3.6e-11 71.2 54 59.3
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 4.7e-11 70.9 54 61.1
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 6.1e-11 70.5 54 61.1
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 8.0e-11 70.1 54 63.0
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 8.0e-11 70.1 54 63.0
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 8.0e-11 70.1 54 63.0
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 8.0e-11 70.1 54 61.1
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 8.0e-11 70.1 54 63.0
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 8.0e-11 70.1 54 64.8
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 1.0e-10 69.7 42 78.6
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 1.0e-10 69.7 54 61.1
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 1.0e-10 69.7 54 61.1
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 1.0e-10 69.7 54 61.1
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 1.0e-10 69.7 54 61.1
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 1.4e-10 69.3 54 61.1
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 1.4e-10 69.3 54 61.1
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 1.4e-10 69.3 52 65.4
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 1.4e-10 69.3 54 63.0
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 1.4e-10 69.3 54 61.1
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 1.8e-10 68.9 52 63.5
C09p49460 Brassica napus HOM05D000306 ORTHO05D005993 2.3e-10 68.6 54 59.3
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 2.3e-10 68.6 54 59.3
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 2.3e-10 68.6 54 63.0
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 2.3e-10 68.6 54 63.0
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 2.3e-10 68.6 54 63.0
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 3.1e-10 68.2 54 63.0
CDE02G3177 Ceratophyllum demersum HOM05D000306 ORTHO05D005993 3.1e-10 68.2 54 66.7
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 4.0e-10 67.8 54 61.1
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 4.0e-10 67.8 54 61.1
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 4.0e-10 67.8 60 58.3
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 5.2e-10 67.4 54 63.0
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 5.2e-10 67.4 54 61.1
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 5.2e-10 67.4 54 61.1
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 6.8e-10 67.0 54 61.1
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 8.9e-10 66.6 43 72.1
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 8.9e-10 66.6 53 60.4
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 1.2e-09 66.2 54 57.4
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 1.2e-09 66.2 54 57.4
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 1.2e-09 66.2 54 57.4
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 1.2e-09 66.2 54 63.0
Nitab4.5_0000937g0040 Nicotiana tabacum HOM05D000306 ORTHO05D005993 1.2e-09 66.2 53 60.4
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 1.2e-09 66.2 54 57.4
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 1.2e-09 66.2 49 63.3
HPP92_013429 Vanilla planifolia HOM05D000306 ORTHO05D005993 1.2e-09 66.2 37 81.1
Haze_22119 Corylus avellana HOM05D000306 ORTHO05D005993 1.5e-09 65.9 52 63.5
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 2.0e-09 65.5 54 61.1
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 3.4e-09 64.7 37 81.1
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 4.4e-09 64.3 54 61.1
Peaxi162Scf00050g00628 Petunia axillaris HOM05D000306 ORTHO05D005993 7.5e-09 63.5 50 62.0
BolC2t10024H Brassica oleracea HOM05D000306 ORTHO05D005993 9.8e-09 63.2 43 69.8
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 9.8e-09 63.2 36 80.6
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 9.8e-09 63.2 37 75.7
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 1.3e-08 62.8 36 80.6
SEGI_35821 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.7e-08 62.4 37 75.7
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 3.7e-08 61.2 54 59.3
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 6.4e-08 60.5 36 75.0
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 8.3e-08 60.1 35 71.4
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 1.1e-07 59.7 34 79.4
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 1.4e-07 59.3 36 72.2
Cre06.g277200 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D005993 2.4e-07 58.5 36 75.0
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 4.1e-07 57.8 58 51.7
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 7.0e-07 57.0 56 48.2
CBR_g30689 Chara braunii HOM05D000306 ORTHO05D005993 6.0e-06 53.9 37 59.5


User provided reference genes

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