Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.2e-64 249.2 164 100.0
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 1.8e-63 246.1 164 95.1
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 4.7e-35 151.8 149 71.8
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 1.7e-32 143.3 154 74.0
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 1.9e-31 139.8 149 74.5
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 3.2e-31 139.0 149 74.5
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 4.1e-31 138.7 151 72.8
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 4.1e-31 138.7 149 73.8
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 1.6e-30 136.7 150 68.7
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 2.1e-30 136.3 149 69.8
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 2.7e-30 136.0 152 70.4
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 3.5e-30 135.6 149 71.8
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 7.8e-30 134.4 153 66.0
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 7.8e-30 134.4 150 70.7
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 1.0e-29 134.0 149 73.8
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 1.0e-29 134.0 150 74.0
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 1.3e-29 133.7 149 67.1
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 2.3e-29 132.9 149 69.8
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 1.1e-28 130.6 150 70.7
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 1.5e-28 130.2 151 70.9
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 1.5e-28 130.2 151 70.2
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 1.5e-28 130.2 150 68.0
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 3.3e-28 129.0 129 72.1
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 4.3e-28 128.6 151 66.2
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 5.6e-28 128.3 150 56.0
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 7.3e-28 127.9 127 63.0
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 1.2e-27 127.1 149 65.8
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.2e-27 127.1 149 67.1
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.2e-27 127.1 149 67.8
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 2.8e-27 125.9 156 68.6
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 3.6e-27 125.6 151 71.5
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 4.7e-27 125.2 149 67.1
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 6.2e-27 124.8 149 65.8
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 1.4e-26 123.6 131 69.5
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 1.8e-26 123.2 150 68.0
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 3.1e-26 122.5 153 53.6
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 4.0e-26 122.1 149 67.8
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 6.8e-26 121.3 153 65.4
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 1.2e-25 120.6 149 57.0
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 2.6e-25 119.4 149 61.7
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 5.8e-25 118.2 149 59.1
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 7.5e-25 117.9 100 66.0
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 7.5e-25 117.9 100 66.0
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 7.5e-25 117.9 150 64.7
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 9.9e-25 117.5 154 59.1
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 9.9e-25 117.5 154 59.1
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 2.2e-24 116.3 149 63.1
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 3.7e-24 115.5 149 63.8
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 3.7e-24 115.5 149 53.7
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 4.9e-24 115.2 149 61.7
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 4.9e-24 115.2 151 51.0
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 8.3e-24 114.4 149 65.8
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.1e-23 114.0 154 59.1
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 1.4e-23 113.6 106 64.2
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 1.9e-23 113.2 127 60.6
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 4.1e-23 112.1 149 58.4
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 4.1e-23 112.1 149 65.1
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 4.1e-23 112.1 105 63.8
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 5.4e-23 111.7 102 64.7
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 5.4e-23 111.7 149 51.0
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 5.4e-23 111.7 149 51.0
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 5.4e-23 111.7 149 51.0
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 7.1e-23 111.3 102 64.7
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 7.1e-23 111.3 102 53.9
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 9.2e-23 110.9 149 45.0
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 1.6e-22 110.2 102 64.7
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 2.1e-22 109.8 150 60.7
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 2.1e-22 109.8 149 65.8
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 3.5e-22 109.0 110 52.7
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 3.5e-22 109.0 102 56.9
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 4.6e-22 108.6 102 62.7
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 4.6e-22 108.6 102 58.8
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 4.6e-22 108.6 149 55.0
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 6.0e-22 108.2 149 61.7
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 1.0e-21 107.5 149 46.3
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 1.0e-21 107.5 149 63.1
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 1.7e-21 106.7 111 51.4
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 1.7e-21 106.7 151 63.6
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 2.3e-21 106.3 151 47.7
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 3.9e-21 105.5 149 61.7
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 8.6e-21 104.4 148 64.9
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 1.9e-20 103.2 149 48.3
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 3.3e-20 102.4 105 50.5
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 3.3e-20 102.4 105 50.5
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 9.5e-20 100.9 149 61.7
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 3.6e-19 99.0 149 55.7
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 6.2e-19 98.2 102 59.8
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 6.2e-19 98.2 102 59.8
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 1.8e-18 96.7 105 51.4
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 6.8e-18 94.7 149 55.0
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 1.5e-17 93.6 102 54.9
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.0e-17 93.2 151 51.0
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.0e-17 93.2 151 51.0
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 3.4e-17 92.4 149 50.3
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 5.8e-17 91.7 171 42.1
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 1.9e-15 86.7 102 55.9
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 9.2e-15 84.3 106 50.9
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 1.7e-13 80.1 103 64.1
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 3.0e-13 79.3 97 51.5
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 1.8e-10 70.1 103 44.7
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 4.0e-10 68.9 50 60.0
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 3.4e-09 65.9 51 52.9
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.7e-08 63.5 39 64.1
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 4.9e-08 62.0 94 47.9
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 1.4e-07 60.5 39 64.1
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 4.6e-06 55.5 29 75.9


User provided reference genes

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