Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028901 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 1.1e-53 213.0 102 100.0
CSS0017962 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 1.2e-20 103.2 53 88.7
Manes.14G141300 Manihot esculenta HOM05D003310 ORTHO05D003911 4.5e-20 101.3 53 84.9
Dinv41402 Davidia involucrata HOM05D003310 ORTHO05D003911 1.3e-19 99.8 53 83.0
Actinidia23542 Actinidia chinensis HOM05D003310 ORTHO05D003911 3.8e-19 98.2 53 83.0
Nitab4.5_0001094g0120 Nicotiana tabacum HOM05D003310 ORTHO05D003911 3.8e-19 98.2 55 78.2
Rhsim03G0256000 Rhododendron simsii HOM05D003310 ORTHO05D003911 5.0e-19 97.8 54 85.2
Solyc07g005200.3 Solanum lycopersicum HOM05D003310 ORTHO05D003911 5.0e-19 97.8 55 78.2
Sopen07g001570 Solanum pennellii HOM05D003310 ORTHO05D003911 5.0e-19 97.8 55 78.2
PGSC0003DMG400003194 Solanum tuberosum HOM05D003310 ORTHO05D003911 5.0e-19 97.8 55 78.2
Lj9A713T34 Lonicera japonica HOM05D003310 ORTHO05D003911 6.6e-19 97.4 53 81.1
CANSAT11G1948 Cannabis sativa HOM05D003310 ORTHO05D003911 8.6e-19 97.1 53 81.1
Gohir.A05G051300 Gossypium hirsutum HOM05D003310 ORTHO05D003911 8.6e-19 97.1 53 81.1
Gohir.D05G052800 Gossypium hirsutum HOM05D003310 ORTHO05D003911 8.6e-19 97.1 53 81.1
Actinidia04282 Actinidia chinensis HOM05D003310 ORTHO05D003911 1.1e-18 96.7 54 81.5
RcHm_v2.0_Chr2g0086021 Rosa chinensis HOM05D003310 ORTHO05D003911 1.1e-18 96.7 55 78.2
vmacro13040 Vaccinium macrocarpon HOM05D003310 ORTHO05D003911 1.1e-18 96.7 53 79.2
PGR142G2272 Punica granatum HOM05D003310 ORTHO05D003911 1.5e-18 96.3 53 81.1
Eucgr.C00369 Eucalyptus grandis HOM05D003310 ORTHO05D003911 1.9e-18 95.9 53 81.1
Gorai.009G054600 Gossypium raimondii HOM05D003310 ORTHO05D003911 1.9e-18 95.9 53 81.1
Nitab4.5_0005407g0030 Nicotiana tabacum HOM05D003310 ORTHO05D003911 1.9e-18 95.9 55 76.4
Potri.006G187700 Populus trichocarpa HOM05D003310 ORTHO05D003911 1.9e-18 95.9 53 79.2
Ciclev10009544m.g Citrus clementina HOM05D003310 ORTHO05D003911 2.5e-18 95.5 53 77.4
Hma1.2p1_0222F.1_g093280 Hydrangea macrophylla HOM05D003310 ORTHO05D003911 2.5e-18 95.5 53 77.4
Manes.06G039400 Manihot esculenta HOM05D003310 ORTHO05D003911 2.5e-18 95.5 53 79.2
TAR383G0058 Trochodendron aralioides HOM05D003310 ORTHO05D003911 2.5e-18 95.5 53 81.1
TAR625G1383 Trochodendron aralioides HOM05D003310 ORTHO05D003911 2.5e-18 95.5 55 76.4
MD02G1010400 Malus domestica HOM05D003310 ORTHO05D003911 3.3e-18 95.1 55 78.2
Potri.018G110700 Populus trichocarpa HOM05D003310 ORTHO05D003911 3.3e-18 95.1 53 81.1
Actinidia38342 Actinidia chinensis HOM05D003310 ORTHO05D003911 4.3e-18 94.7 56 76.8
Cpa.g.sc46.121 Carica papaya HOM05D003310 ORTHO05D003911 4.3e-18 94.7 53 77.4
COL.COLO4_18772 Corchorus olitorius HOM05D003310 ORTHO05D003911 4.3e-18 94.7 53 77.4
Duzib187G0039 Durio zibethinus HOM05D003310 ORTHO05D003911 4.3e-18 94.7 53 79.2
Sabra06G0143500 Salix brachista HOM05D003310 ORTHO05D003911 5.6e-18 94.4 53 77.4
SGA_v2.0_scaffold387G50513 Striga asiatica HOM05D003310 ORTHO05D003911 5.6e-18 94.4 55 76.4
TAR636G1686 Trochodendron aralioides HOM05D003310 ORTHO05D003911 5.6e-18 94.4 53 77.4
GSVIVG01003730001 Vitis vinifera HOM05D003310 ORTHO05D003911 5.6e-18 94.4 53 81.1
CSS0029907 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 7.3e-18 94.0 53 77.4
FAN23G1365 Fragaria x ananassa HOM05D003310 ORTHO05D003911 9.5e-18 93.6 55 76.4
FAN28G2727 Fragaria x ananassa HOM05D003310 ORTHO05D003911 9.5e-18 93.6 55 76.4
Hma1.2p1_0028F.1_g017350 Hydrangea macrophylla HOM05D003310 ORTHO05D003911 9.5e-18 93.6 53 79.2
Lsat_1_v5_gn_3_121981 Lactuca sativa HOM05D003310 ORTHO05D003911 1.2e-17 93.2 54 79.6
Prupe.7G259700 Prunus persica HOM05D003310 ORTHO05D003911 1.2e-17 93.2 55 78.2
CiPaw.16G115200 Carya illinoinensis HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 75.5
ClCG06G012230 Citrullus lanatus HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 77.4
MELO3C010243.2 Cucumis melo HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 77.4
Dinv42887 Davidia involucrata HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 79.2
Dinv43213 Davidia involucrata HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 79.2
Gorai.004G291400 Gossypium raimondii HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 77.4
Thecc.09G034100 Theobroma cacao HOM05D003310 ORTHO05D003911 1.6e-17 92.8 53 77.4
Gohir.A08G251500 Gossypium hirsutum HOM05D003310 ORTHO05D003911 2.1e-17 92.4 53 77.4
Gohir.A07G026100 Gossypium hirsutum HOM05D003310 ORTHO05D003911 2.8e-17 92.0 53 77.4
Oeu052184.1 Olea europaea HOM05D001160 ORTHO05D001092 2.8e-17 92.0 53 77.4
PGR102G2532 Punica granatum HOM05D003310 ORTHO05D003911 2.8e-17 92.0 53 75.5
TWI34G0086 Tripterygium wilfordii HOM05D003310 ORTHO05D003911 2.8e-17 92.0 53 75.5
TWI63G1800 Tripterygium wilfordii HOM05D003310 ORTHO05D003911 2.8e-17 92.0 53 75.5
CiPaw.15G173700 Carya illinoinensis HOM05D003310 ORTHO05D003911 3.6e-17 91.7 53 75.5
FvH4_1g01250 Fragaria vesca HOM05D003310 ORTHO05D003911 3.6e-17 91.7 55 74.5
FAN19G2646 Fragaria x ananassa HOM05D003310 ORTHO05D003911 3.6e-17 91.7 55 74.5
HanXRQChr03g0092001 Helianthus annuus HOM05D003310 ORTHO05D003911 3.6e-17 91.7 54 77.8
VMungo0464G0291 Vigna mungo HOM05D003310 ORTHO05D003911 3.6e-17 91.7 53 79.2
arahy.Tifrunner.gnm1.ann1.F2WDYD Arachis hypogaea HOM05D003310 ORTHO05D003911 4.7e-17 91.3 53 77.4
Migut.K00345 Erythranthe guttata HOM05D003310 ORTHO05D003911 4.7e-17 91.3 55 74.5
Gohir.D08G273000 Gossypium hirsutum HOM05D003310 ORTHO05D003911 4.7e-17 91.3 53 75.5
Atru.chr7.157 Acer truncatum HOM05D003310 ORTHO05D003911 8.0e-17 90.5 53 75.5
Gohir.D07G030000 Gossypium hirsutum HOM05D003310 ORTHO05D003911 8.0e-17 90.5 53 75.5
Gorai.001G031200 Gossypium raimondii HOM05D003310 ORTHO05D003911 8.0e-17 90.5 53 75.5
HanXRQChr12g0357281 Helianthus annuus HOM05D003310 ORTHO05D003911 1.0e-16 90.1 55 74.5
CARHR271870 Cardamine hirsuta HOM05D003310 ORTHO05D003911 1.4e-16 89.7 53 73.6
CsaV3_1G028720 Cucumis sativus L. HOM05D003310 ORTHO05D003911 1.4e-16 89.7 53 75.5
Glyma.13G136600 Glycine max HOM05D003310 ORTHO05D003911 1.4e-16 89.7 53 75.5
DCAR_012641 Daucus carota HOM05D003310 ORTHO05D002425 1.8e-16 89.4 53 73.6
DCAR_019371 Daucus carota HOM05D003310 ORTHO05D003911 1.8e-16 89.4 53 73.6
Nitab4.5_0001970g0010 Nicotiana tabacum HOM05D003310 ORTHO05D003911 1.8e-16 89.4 54 74.1
Oeu028815.1 Olea europaea HOM05D003310 ORTHO05D003911 1.8e-16 89.4 53 73.6
AL8G34160 Arabidopsis lyrata HOM05D003310 ORTHO05D003911 2.3e-16 89.0 53 73.6
Migut.J01319 Erythranthe guttata HOM05D003310 ORTHO05D003911 2.3e-16 89.0 55 70.9
Glyma.09G097700 Glycine max HOM05D003310 ORTHO05D003911 2.3e-16 89.0 53 75.5
SGA_v2.0_scaffold206G41821 Striga asiatica HOM05D003310 ORTHO05D003911 2.3e-16 89.0 55 72.7
THA.LOC104817832 Tarenaya hassleriana HOM05D003310 ORTHO05D003911 2.3e-16 89.0 53 71.7
AT5G58060 Arabidopsis thaliana HOM05D003310 ORTHO05D003911 3.0e-16 88.6 53 71.7
Thhalv10014720m.g Eutrema salsugineum HOM05D003310 ORTHO05D003911 3.0e-16 88.6 53 71.7
Nn2g14309 Nelumbo nucifera HOM05D003310 ORTHO05D003911 3.0e-16 88.6 53 75.5
Phvul.004G108500 Phaseolus vulgaris HOM05D003310 ORTHO05D003911 3.0e-16 88.6 53 73.6
QL02p092524 Quercus lobata HOM05D003310 ORTHO05D003911 3.0e-16 88.6 53 71.7
Sed0010420 Sechium edule HOM05D003310 ORTHO05D003911 3.0e-16 88.6 53 71.7
Cfa020851 Carpinus fangiana HOM05D003310 ORTHO05D003911 5.2e-16 87.8 55 67.3
Lsat_1_v5_gn_5_91400 Lactuca sativa HOM05D003310 ORTHO05D003911 5.2e-16 87.8 55 72.7
MD15G1155400 Malus domestica HOM05D003310 ORTHO05D003911 5.2e-16 87.8 55 74.5
MD17G1171100 Malus domestica HOM05D003310 ORTHO05D003911 5.2e-16 87.8 55 74.5
Nn2g14304 Nelumbo nucifera HOM05D003310 ORTHO05D003911 5.2e-16 87.8 53 73.6
Sp6g19730 Schrenkiella parvula HOM05D003310 ORTHO05D003911 5.2e-16 87.8 53 71.7
Haze_19239 Corylus avellana HOM05D003310 ORTHO05D003911 6.8e-16 87.4 55 67.3
ECA234G0443 Erigeron canadensis HOM05D003310 ORTHO05D003911 6.8e-16 87.4 55 70.9
Peaxi162Scf00108g00616 Petunia axillaris HOM05D003310 ORTHO05D003911 6.8e-16 87.4 53 71.7
Peaxi162Scf00347g00622 Petunia axillaris HOM05D003310 ORTHO05D003911 6.8e-16 87.4 56 73.2
Hund08390 Selenicereus undatus HOM05D003310 ORTHO05D003911 6.8e-16 87.4 53 73.6
Carub.0008s1861 Capsella rubella HOM05D003310 ORTHO05D003911 8.9e-16 87.0 53 69.8
DCAR_017901 Daucus carota HOM05D003310 ORTHO05D003911 8.9e-16 87.0 53 69.8
HanXRQChr10g0314611 Helianthus annuus HOM05D003310 ORTHO05D003911 1.2e-15 86.7 55 69.1
Cpa.g.sc43.124 Carica papaya HOM05D003310 ORTHO05D003911 1.5e-15 86.3 53 73.6
ECA240G4234 Erigeron canadensis HOM05D003310 ORTHO05D003911 1.5e-15 86.3 61 67.2
THA.LOC104813543 Tarenaya hassleriana HOM05D003310 ORTHO05D003911 1.5e-15 86.3 53 71.7
MSTRG.10628 Avicennia marina HOM05D003310 ORTHO05D003911 2.0e-15 85.9 55 69.1
Lj6g0015999 Lotus japonicus HOM05D003310 ORTHO05D003911 2.0e-15 85.9 53 73.6
BcaB08g36153 Brassica carinata HOM05D003310 ORTHO05D003911 2.6e-15 85.5 53 71.7
BcaC04g19910 Brassica carinata HOM05D003310 ORTHO05D003911 2.6e-15 85.5 53 71.7
A10p16110 Brassica napus HOM05D003310 ORTHO05D003911 2.6e-15 85.5 53 71.7
C09p49980 Brassica napus HOM05D003310 ORTHO05D003911 2.6e-15 85.5 53 71.7
BolC9t57851H Brassica oleracea HOM05D003310 ORTHO05D003911 2.6e-15 85.5 53 71.7
BraA10t43618Z Brassica rapa HOM05D003310 ORTHO05D003911 2.6e-15 85.5 53 71.7
CAN.G520.20 Capsicum annuum HOM05D003310 ORTHO05D003911 3.4e-15 85.1 49 77.6
Eucgr.C04043 Eucalyptus grandis HOM05D003310 ORTHO05D003911 3.4e-15 85.1 54 72.2
TAR374G1612 Trochodendron aralioides HOM05D003310 ORTHO05D003911 3.4e-15 85.1 53 71.7
BolC2t07478H Brassica oleracea HOM05D003310 ORTHO05D003911 4.4e-15 84.7 61 63.9
Eucgr.L00628 Eucalyptus grandis HOM05D003310 ORTHO05D003911 4.4e-15 84.7 55 70.9
Lsat_1_v5_gn_7_48340 Lactuca sativa HOM05D003310 ORTHO05D003911 4.4e-15 84.7 55 69.1
BcaC03g14126 Brassica carinata HOM05D003310 ORTHO05D003911 5.8e-15 84.3 53 69.8
A02p08010 Brassica napus HOM05D003310 ORTHO05D003911 5.8e-15 84.3 53 69.8
C02p13660 Brassica napus HOM05D003310 ORTHO05D003911 5.8e-15 84.3 53 69.8
BraA02t05873Z Brassica rapa HOM05D003310 ORTHO05D003911 5.8e-15 84.3 53 69.8
HanXRQChr09g0243541 Helianthus annuus HOM05D003310 ORTHO05D003911 5.8e-15 84.3 55 69.1
ECA240G3497 Erigeron canadensis HOM05D003310 ORTHO05D003911 7.5e-15 84.0 57 68.4
Sed0019848 Sechium edule HOM05D003310 ORTHO05D003911 7.5e-15 84.0 55 65.5
arahy.Tifrunner.gnm1.ann1.2IXB55 Arachis hypogaea HOM05D003310 ORTHO05D003911 1.3e-14 83.2 57 70.2
arahy.Tifrunner.gnm1.ann1.6C44PS Arachis hypogaea HOM05D003310 ORTHO05D003911 1.3e-14 83.2 57 70.2
BcaB05g22399 Brassica carinata HOM05D003310 ORTHO05D003911 1.3e-14 83.2 53 67.9
Lalb_Chr03g0042481 Lupinus albus HOM05D003310 ORTHO05D003911 1.3e-14 83.2 54 75.9
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 2.2e-14 82.4 53 69.8
SalBow1G7292 Salvia bowleyana HOM05D003310 ORTHO05D003911 2.9e-14 82.0 55 67.3
Sc12g0008910 Simmondsia chinensis HOM05D003310 ORTHO05D003911 3.7e-14 81.6 53 69.8
Cc06_g15310 Coffea canephora HOM05D003310 ORTHO05D003911 4.9e-14 81.3 54 72.2
Lalb_Chr19g0125201 Lupinus albus HOM05D003310 ORTHO05D003911 4.9e-14 81.3 54 74.1
TPR.G37572 Trifolium pratense HOM05D003310 ORTHO05D003911 4.9e-14 81.3 53 71.7
Oeu043494.2 Olea europaea HOM05D003310 ORTHO05D003911 6.4e-14 80.9 53 67.9
ATR0721G094 Amborella trichopoda HOM05D003310 ORTHO05D003911 8.3e-14 80.5 54 64.8
CDE05G2640 Ceratophyllum demersum HOM05D003310 ORTHO05D003911 8.3e-14 80.5 54 68.5
Medtr4g105490 Medicago truncatula HOM05D003310 ORTHO05D003911 8.3e-14 80.5 53 69.8
Psat4g058880 Pisum sativum HOM05D003310 ORTHO05D003911 8.3e-14 80.5 53 69.8
unitig_52.g17568 Utricularia gibba HOM05D003310 ORTHO05D003911 1.4e-13 79.7 53 69.8
MBI18_g03876_MAGBIO Magnolia biondii HOM05D003310 ORTHO05D003911 1.8e-13 79.3 56 64.3
ATR0561G028 Amborella trichopoda HOM05D003310 ORTHO05D003911 4.1e-13 78.2 54 63.0
vmacro08171 Vaccinium macrocarpon HOM05D003310 ORTHO05D003911 9.2e-13 77.0 51 62.7
AUR62043315 Chenopodium quinoa HOM05D003310 ORTHO05D003911 1.2e-12 76.6 53 67.9
AUR62044192 Chenopodium quinoa HOM05D003310 ORTHO05D003911 1.2e-12 76.6 53 67.9
AUR62009538 Chenopodium quinoa HOM05D003310 ORTHO05D003911 1.6e-12 76.3 53 67.9
EL10Ac9g22448 Beta vulgaris HOM05D003310 ORTHO05D003911 2.0e-12 75.9 53 67.9
SMO358G0658 Selaginella moellendorffii HOM05D003310 ORTHO05D003911 2.0e-12 75.9 46 71.7
HPP92_016148 Vanilla planifolia HOM05D003310 ORTHO05D003911 2.0e-12 75.9 44 72.7
GSVIVG01031355001 Vitis vinifera HOM05D003310 ORTHO05D003911 2.7e-12 75.5 53 64.2
PSO210G7514 Papaver somniferum HOM05D003310 ORTHO05D003911 3.5e-12 75.1 44 77.3
unitig_62.g23483 Utricularia gibba HOM05D003310 ORTHO05D003911 6.0e-12 74.3 52 65.4
PSO761G0723 Papaver somniferum HOM05D003310 ORTHO05D003911 7.8e-12 73.9 44 75.0
HPP92_004427 Vanilla planifolia HOM05D003310 ORTHO05D003911 2.3e-11 72.4 47 66.0
HPP92_027190 Vanilla planifolia HOM05D003310 ORTHO05D003911 2.3e-11 72.4 47 66.0
HPP92_004387 Vanilla planifolia HOM05D003310 ORTHO05D003911 3.0e-11 72.0 47 66.0
PSO357G0388 Papaver somniferum HOM05D003310 ORTHO05D003911 5.0e-11 71.2 61 57.4
Mapoly0127s0017 Marchantia polymorpha HOM05D003310 ORTHO05D003911 6.6e-11 70.9 46 65.2
CSS0035438 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D112519 1.5e-10 69.7 33 97.0
SEGI_02362 Sequoiadendron giganteum HOM05D003310 ORTHO05D003911 1.5e-10 69.7 46 65.2
Zm00001eb146760 Zea mays HOM05D003310 ORTHO05D003911 1.5e-10 69.7 46 65.2
PSO170G5058 Papaver somniferum HOM05D003310 ORTHO05D003911 1.9e-10 69.3 61 55.7
Zm00001eb356250 Zea mays HOM05D003310 ORTHO05D003911 2.5e-10 68.9 46 65.2
Zm00001eb366710 Zea mays HOM05D003310 ORTHO05D003911 3.3e-10 68.6 46 65.2
AT5G58180 Arabidopsis thaliana HOM05D003310 ORTHO05D003911 4.3e-10 68.2 57 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4184 Anthoceros agrestis HOM05D003310 ORTHO05D003911 5.6e-10 67.8 46 60.9
AagrBONN_evm.TU.Sc2ySwM_228.430 Anthoceros agrestis HOM05D003310 ORTHO05D003911 7.3e-10 67.4 43 65.1
MCO13G211 Micromonas commoda HOM05D003310 ORTHO05D003911 9.5e-10 67.0 55 52.7
Os01g0866300 Oryza sativa ssp. japonica HOM05D003310 ORTHO05D003911 2.8e-09 65.5 44 63.6
Aqoxy6G01790 Aquilegia oxysepala HOM05D003310 ORTHO05D003911 8.0e-09 63.9 54 53.7
CBR_g31440 Chara braunii HOM05D003310 ORTHO05D003911 8.0e-09 63.9 53 52.8
Pp3c27_2650 Physcomitrium patens HOM05D003310 ORTHO05D003911 2.3e-08 62.4 46 56.5
Os01g0964000 Oryza sativa ssp. japonica HOM05D003310 ORTHO05D003911 4.0e-08 61.6 41 63.4
Pp3c16_16980 Physcomitrium patens HOM05D003310 ORTHO05D003911 5.2e-08 61.2 46 54.3
Zm00001eb362460 Zea mays HOM05D003310 ORTHO05D003911 6.8e-08 60.8 44 56.8
RcHm_v2.0_Chr5g0044951 Rosa chinensis HOM05D003310 ORTHO05D342156 8.9e-08 60.5 59 47.5
A02p07890 Brassica napus HOM05D003310 ORTHO05D003911 9.8e-07 57.0 55 47.3
C02p13530 Brassica napus HOM05D003310 ORTHO05D003911 9.8e-07 57.0 55 47.3
BolC2t07465H Brassica oleracea HOM05D003310 ORTHO05D003911 9.8e-07 57.0 55 47.3
BraA02t05862Z Brassica rapa HOM05D003310 ORTHO05D003911 9.8e-07 57.0 55 47.3
PSO407G0004 Papaver somniferum HOM05D003310 ORTHO05D003911 9.8e-07 57.0 44 61.4
PRCOL_00000446 Prasinoderma coloniale HOM05D003310 ORTHO05D003911 2.9e-06 55.5 45 55.6
Cre17.g728150 Chlamydomonas reinhardtii HOM05D003310 ORTHO05D003911 4.9e-06 54.7 57 40.4
PSO302G0011 Papaver somniferum HOM05D003310 ORTHO05D003911 8.3e-06 53.9 44 61.4


User provided reference genes

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