Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002850 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 5.0e-44 180.6 87 100.0
CSS0028890 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 5.0e-44 180.6 87 100.0
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 1.9e-27 125.6 63 93.7
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 4.4e-24 114.4 59 89.8
Hma1.2p1_1423F.1_g282660 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 7.5e-24 113.6 63 84.1
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 3.2e-22 108.2 54 92.6
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 9.2e-22 106.7 62 77.4
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.2e-21 106.3 59 83.1
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 6.0e-21 104.0 58 82.8
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 6.0e-21 104.0 58 82.8
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 6.0e-21 104.0 56 85.7
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 6.0e-21 104.0 59 81.4
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 7.8e-21 103.6 63 74.6
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 1.0e-20 103.2 60 75.0
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 1.7e-20 102.4 66 72.7
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 1.7e-20 102.4 66 72.7
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 2.3e-20 102.1 57 80.7
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 2.3e-20 102.1 57 80.7
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 2.3e-20 102.1 59 79.7
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 3.0e-20 101.7 58 77.6
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 5.1e-20 100.9 57 78.9
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 5.1e-20 100.9 57 78.9
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 5.1e-20 100.9 57 78.9
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 6.6e-20 100.5 63 73.0
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 6.6e-20 100.5 54 85.2
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 8.6e-20 100.1 59 78.0
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 1.1e-19 99.8 57 78.9
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 1.1e-19 99.8 57 78.9
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 1.5e-19 99.4 60 75.0
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 1.5e-19 99.4 60 75.0
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 1.5e-19 99.4 58 75.9
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 1.5e-19 99.4 62 74.2
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 1.9e-19 99.0 54 83.3
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 2.5e-19 98.6 62 75.8
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 2.5e-19 98.6 60 73.3
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 2.5e-19 98.6 54 81.5
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 3.3e-19 98.2 57 77.2
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 3.3e-19 98.2 56 78.6
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 3.3e-19 98.2 54 81.5
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 3.3e-19 98.2 58 74.1
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 4.3e-19 97.8 57 78.9
Haze_22118 Corylus avellana HOM05D000306 ORTHO05D005993 5.6e-19 97.4 62 74.2
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 5.6e-19 97.4 54 83.3
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 7.3e-19 97.1 57 77.2
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 7.3e-19 97.1 57 77.2
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 9.5e-19 96.7 53 84.9
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 9.5e-19 96.7 53 84.9
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 9.5e-19 96.7 53 84.9
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 1.2e-18 96.3 56 78.6
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 1.2e-18 96.3 57 77.2
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 1.2e-18 96.3 57 75.4
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 1.2e-18 96.3 57 77.2
BolC5t33030H Brassica oleracea HOM05D000306 ORTHO05D005993 1.2e-18 96.3 57 77.2
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 1.2e-18 96.3 63 69.8
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 1.2e-18 96.3 54 79.6
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 1.6e-18 95.9 54 81.5
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 1.6e-18 95.9 63 71.4
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 2.1e-18 95.5 60 68.3
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 2.1e-18 95.5 54 79.6
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 2.1e-18 95.5 54 77.8
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 2.8e-18 95.1 56 76.8
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 2.8e-18 95.1 60 68.3
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 3.6e-18 94.7 56 76.8
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 3.6e-18 94.7 56 76.8
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 3.6e-18 94.7 59 72.9
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 4.7e-18 94.4 55 74.5
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 4.7e-18 94.4 56 78.6
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 4.7e-18 94.4 57 77.2
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 4.7e-18 94.4 64 73.4
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 4.7e-18 94.4 57 73.7
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 8.1e-18 93.6 56 76.8
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 8.1e-18 93.6 56 73.2
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 1.1e-17 93.2 56 69.6
Cc06_g13470 Coffea canephora HOM05D000306 ORTHO05D005993 1.1e-17 93.2 56 73.2
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 1.4e-17 92.8 57 73.7
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 1.4e-17 92.8 57 75.4
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 1.4e-17 92.8 54 75.9
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 2.4e-17 92.0 54 75.9
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 2.4e-17 92.0 54 77.8
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 3.1e-17 91.7 56 75.0
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 3.1e-17 91.7 67 68.7
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 4.0e-17 91.3 65 67.7
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 4.0e-17 91.3 54 77.8
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 6.8e-17 90.5 64 70.3
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 6.8e-17 90.5 54 77.8
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 6.8e-17 90.5 56 75.0
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 2.0e-16 89.0 57 71.9
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 2.6e-16 88.6 57 71.9
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 3.4e-16 88.2 54 77.8
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 4.4e-16 87.8 60 66.7
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 4.4e-16 87.8 60 66.7
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 5.8e-16 87.4 54 72.2
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 7.6e-16 87.0 54 75.9
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 7.6e-16 87.0 54 74.1
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 2.9e-15 85.1 46 84.8
Peaxi162Scf00610g00360 Petunia axillaris HOM05D000306 ORTHO05D005993 2.9e-15 85.1 46 87.0
SEGI_37083 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 3.8e-15 84.7 54 68.5
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 8.4e-15 83.6 60 63.3
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 4.2e-14 81.3 56 66.1
BcaB01g04449 Brassica carinata HOM05D000306 ORTHO05D005993 6.6e-12 73.9 44 72.7
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 1.1e-11 73.2 54 64.8
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 3.3e-11 71.6 51 68.6
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 4.3e-11 71.2 52 69.2
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 7.3e-11 70.5 47 61.7
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 4.4e-08 61.2 55 47.3
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 7.6e-08 60.5 51 51.0


User provided reference genes

Program Settings