Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 8.0e-163 577.4 377 100.0
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.1e-151 540.4 337 95.5
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.8e-122 443.4 258 87.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.1e-118 429.9 260 84.2
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.7e-117 426.8 255 84.7
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 9.6e-116 421.0 261 82.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 4.8e-115 418.7 259 82.6
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 7.6e-113 411.4 259 80.3
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.7e-112 410.2 258 82.9
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.2e-112 409.8 260 78.8
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.9e-112 409.5 257 81.7
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.2e-111 405.6 254 81.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 5.4e-111 405.2 254 77.6
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 9.3e-111 404.4 250 81.6
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.6e-110 403.7 260 78.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.1e-110 403.3 252 79.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.1e-110 403.3 255 78.4
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.7e-110 402.9 260 79.2
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 6.0e-110 401.7 266 78.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.3e-109 399.8 260 76.9
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.3e-109 399.8 261 79.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.3e-109 399.8 256 78.5
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.3e-109 399.8 254 78.0
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.9e-109 399.1 253 78.3
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 6.6e-109 398.3 246 81.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.1e-108 397.5 260 76.9
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.5e-108 397.1 262 77.9
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.5e-108 397.1 262 79.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.5e-108 396.4 245 80.0
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 4.3e-108 395.6 253 79.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.3e-108 395.6 245 79.6
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 4.3e-108 395.6 259 77.6
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 5.6e-108 395.2 252 79.4
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 7.4e-108 394.8 255 78.0
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 9.6e-108 394.4 259 77.6
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.6e-107 393.7 257 78.2
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.1e-107 393.3 252 77.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.1e-107 393.3 245 79.2
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.6e-107 392.5 252 79.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 6.2e-107 391.7 252 78.2
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 8.1e-107 391.3 256 78.1
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.1e-106 391.0 259 76.8
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.8e-106 390.2 259 76.8
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.0e-106 389.0 259 76.4
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 5.3e-106 388.7 255 78.4
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 6.9e-106 388.3 257 76.7
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 9.0e-106 387.9 281 73.3
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 2.0e-105 386.7 260 76.5
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.0e-105 386.7 250 78.4
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.6e-105 386.3 260 75.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.4e-105 386.0 256 77.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 5.8e-105 385.2 254 76.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.8e-105 385.2 257 75.9
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 5.8e-105 385.2 257 77.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 7.6e-105 384.8 251 76.9
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.3e-104 384.0 246 78.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.2e-104 383.3 257 76.7
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.9e-104 382.9 255 76.5
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.9e-104 382.9 284 71.1
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 8.4e-104 381.3 258 75.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.4e-103 380.6 257 75.9
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.9e-103 380.2 249 76.3
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 7.1e-103 378.3 261 72.8
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 9.3e-103 377.9 271 73.4
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.2e-102 377.5 258 73.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.6e-102 377.1 251 74.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.6e-102 375.6 260 73.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.0e-101 374.4 260 72.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.8e-101 373.6 261 73.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.3e-101 373.2 251 75.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.9e-101 372.5 254 73.6
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.1e-101 372.1 254 73.2
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.1e-100 370.9 243 74.5
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.5e-100 370.5 256 73.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.9e-100 370.2 253 71.9
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 3.3e-100 369.4 245 74.7
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 4.3e-100 369.0 250 73.6
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 4.3e-100 369.0 254 72.4
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 5.6e-100 368.6 244 75.0
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 7.4e-100 368.2 254 71.3
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 7.4e-100 368.2 326 63.2
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 9.6e-100 367.9 244 74.6
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-99 367.5 252 71.4
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 2.1e-99 366.7 249 72.3
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.8e-99 366.3 253 71.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.8e-99 366.3 253 71.1
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.8e-99 366.3 253 71.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 5.3e-98 362.1 261 73.2
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 4.5e-97 359.0 252 71.0
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 2.9e-96 356.3 252 71.8
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 2.5e-95 353.2 259 69.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.3e-93 346.7 245 66.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-88 330.9 243 66.7
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-88 330.9 251 64.9
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.2e-88 330.1 251 64.9
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.2e-88 330.1 243 66.7
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.9e-87 327.0 198 81.8
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.6e-86 322.8 254 63.0
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.1e-84 317.8 211 74.9
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.2e-78 297.7 251 64.9
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.1e-74 284.6 244 58.6
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-72 277.7 253 58.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.8e-67 260.0 260 49.6
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.1e-66 258.1 250 52.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 5.9e-65 252.3 263 48.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 8.5e-64 248.4 165 75.2
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.9e-56 223.4 166 71.1
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 5.0e-56 222.6 166 72.3
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.5e-55 220.3 134 78.4
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 5.5e-55 219.2 141 78.7
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.2e-54 218.0 238 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.0e-53 214.9 201 53.7
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-51 208.0 187 62.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.2e-45 186.0 127 76.4
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 6.8e-45 185.7 184 58.7
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.2e-41 174.9 165 60.6
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.9e-41 172.6 109 76.1
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 5.6e-39 166.0 109 72.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-38 164.5 167 58.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.7e-35 153.3 117 66.7
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.4e-34 149.4 106 70.8
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.0e-32 142.9 105 73.3
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.9e-31 141.0 94 76.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.7e-30 136.3 106 61.3
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.2e-28 131.7 74 81.1
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 7.5e-28 129.0 73 86.3
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.3e-24 118.2 92 72.8
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.9e-24 116.7 81 70.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 5.6e-23 112.8 244 31.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-21 108.2 80 67.5
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.8e-20 102.8 80 58.8
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.4e-18 97.4 82 57.3
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.6e-17 93.2 56 80.4
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-16 91.7 92 55.4
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.9e-16 90.1 55 80.0
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 6.6e-16 89.4 50 84.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.2e-14 85.1 96 52.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.0e-13 80.1 185 30.3
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.8e-13 79.3 128 38.3
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 7.6e-12 75.9 59 54.2
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.4e-11 72.8 147 32.0
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 2.7e-09 67.4 47 72.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 4.6e-09 66.6 70 54.3
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.0e-08 65.5 45 66.7


User provided reference genes

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