Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 4.1e-56 221.1 106 100.0
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 5.0e-54 214.2 106 97.2
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.4e-35 152.9 103 77.7
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 4.4e-34 147.9 103 73.8
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 7.5e-34 147.1 106 70.8
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.7e-33 146.0 103 73.8
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.9e-33 145.2 111 68.5
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 3.7e-33 144.8 103 70.9
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 4.9e-33 144.4 104 72.1
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 4.9e-33 144.4 111 68.5
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 4.9e-33 144.4 111 68.5
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 8.3e-33 143.7 104 71.2
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 1.1e-32 143.3 110 68.2
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.4e-32 142.9 104 70.2
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.4e-32 142.9 104 70.2
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.4e-32 142.9 111 66.7
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.8e-32 142.5 103 71.8
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 2.4e-32 142.1 105 69.5
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 2.4e-32 142.1 103 69.9
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 2.4e-32 142.1 104 69.2
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 2.4e-32 142.1 103 71.8
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 2.4e-32 142.1 110 68.2
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 2.4e-32 142.1 103 69.9
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 3.2e-32 141.7 103 70.9
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 3.2e-32 141.7 102 70.6
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 3.2e-32 141.7 104 69.2
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.2e-32 141.7 103 70.9
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.2e-32 141.7 103 70.9
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 3.2e-32 141.7 102 71.6
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 4.1e-32 141.4 104 70.2
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 4.1e-32 141.4 104 69.2
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 4.1e-32 141.4 103 70.9
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 4.1e-32 141.4 104 71.2
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 4.1e-32 141.4 111 66.7
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 4.1e-32 141.4 104 70.2
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 5.4e-32 141.0 103 70.9
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 5.4e-32 141.0 102 70.6
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 7.0e-32 140.6 104 70.2
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 69.9
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 70.9
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 68.9
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 7.0e-32 140.6 103 68.9
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.0e-32 140.6 101 71.3
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.0e-32 140.6 101 71.3
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 9.2e-32 140.2 109 67.0
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.2e-31 139.8 103 69.9
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.2e-31 139.8 102 72.5
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.2e-31 139.8 104 69.2
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 1.2e-31 139.8 104 69.2
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.2e-31 139.8 102 69.6
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 1.6e-31 139.4 104 68.3
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.6e-31 139.4 102 71.6
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 1.6e-31 139.4 104 69.2
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 1.6e-31 139.4 103 68.0
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.0e-31 139.0 104 69.2
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 2.0e-31 139.0 103 69.9
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 2.0e-31 139.0 103 69.9
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 2.0e-31 139.0 103 68.0
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 2.7e-31 138.7 103 68.9
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 3.5e-31 138.3 103 70.9
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 3.5e-31 138.3 102 69.6
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 3.5e-31 138.3 107 66.4
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 3.5e-31 138.3 104 68.3
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 3.5e-31 138.3 104 68.3
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 4.6e-31 137.9 104 67.3
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 7.8e-31 137.1 104 67.3
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.0e-30 136.7 103 69.9
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 1.0e-30 136.7 104 69.2
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.0e-30 136.7 104 68.3
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 1.7e-30 136.0 103 69.9
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.7e-30 136.0 103 69.9
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.7e-30 136.0 103 69.9
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.7e-30 136.0 102 70.6
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.7e-30 136.0 103 69.9
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.3e-30 135.6 104 66.3
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.3e-30 135.6 104 67.3
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.0e-30 135.2 101 69.3
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.0e-30 135.2 101 69.3
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 3.0e-30 135.2 101 69.3
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 3.0e-30 135.2 103 67.0
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 3.0e-30 135.2 102 69.6
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 3.9e-30 134.8 106 65.1
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 3.9e-30 134.8 103 68.9
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 3.9e-30 134.8 103 69.9
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 6.6e-30 134.0 103 68.9
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 6.6e-30 134.0 101 69.3
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 1.1e-29 133.3 101 68.3
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.5e-29 132.9 104 68.3
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 1.5e-29 132.9 102 68.6
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 3.3e-29 131.7 103 68.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 4.3e-29 131.3 100 69.0
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 5.6e-29 131.0 100 69.0
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 9.5e-29 130.2 104 64.4
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 9.5e-29 130.2 103 67.0
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 9.5e-29 130.2 104 64.4
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 8.0e-28 127.1 101 66.3
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.4e-27 126.3 103 65.0
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 2.3e-27 125.6 101 65.3
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 5.8e-26 120.9 112 60.7
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 8.3e-25 117.1 102 60.8
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 3.0e-22 108.6 102 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.5e-21 106.3 97 57.7
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 8.1e-20 100.5 102 52.0
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 1.8e-19 99.4 101 49.5
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 2.2e-17 92.4 94 54.3
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 6.4e-17 90.9 80 62.5
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 3.2e-16 88.6 57 78.9
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 1.5e-13 79.7 56 67.9
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 3.4e-10 68.6 44 75.0
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.7e-09 66.2 44 72.7
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 4.9e-09 64.7 42 66.7
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 6.0e-07 57.8 37 67.6
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.3e-06 56.6 33 81.8
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 3.9e-06 55.1 44 61.4


User provided reference genes

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