Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.0e-115 419.1 203 100.0
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.1e-71 271.6 158 87.3
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 2.1e-69 266.2 180 75.6
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.9e-58 229.2 175 63.4
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.9e-58 229.2 172 72.7
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.2e-56 223.8 172 64.0
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 2.1e-56 223.0 174 66.1
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 2.1e-56 223.0 121 84.3
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.3e-55 220.3 174 64.9
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 1.9e-54 216.5 168 67.3
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.3e-54 215.7 170 64.1
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 4.3e-54 215.3 153 71.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 9.6e-54 214.2 158 64.6
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.8e-53 212.6 175 68.0
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.8e-52 209.9 174 64.9
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 2.4e-52 209.5 170 61.8
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.2e-51 207.2 174 62.6
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.5e-51 206.8 170 62.4
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 9.9e-51 204.1 113 82.3
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.3e-50 203.8 154 68.2
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 8.4e-50 201.1 168 63.7
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.1e-49 200.7 162 63.6
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.9e-49 199.9 172 61.6
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 4.2e-49 198.7 189 58.2
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 5.4e-49 198.4 154 66.2
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 7.1e-49 198.0 184 60.3
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 2.7e-48 196.1 170 60.6
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 2.7e-48 196.1 147 66.0
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.0e-48 194.9 176 59.7
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 6.0e-48 194.9 172 59.3
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.0e-47 192.6 164 58.5
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 3.9e-47 192.2 164 65.2
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 3.9e-47 192.2 112 80.4
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.1e-46 190.7 172 59.9
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.1e-46 190.7 263 45.2
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.5e-46 189.5 176 59.1
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 4.3e-46 188.7 175 57.7
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.3e-46 188.7 175 57.7
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.3e-45 187.2 181 55.8
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 2.1e-45 186.4 170 58.8
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.8e-45 186.0 172 58.1
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 2.8e-45 186.0 172 57.0
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 3.6e-45 185.7 171 57.3
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 6.2e-45 184.9 196 51.5
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 3.1e-44 182.6 149 63.8
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 5.3e-44 181.8 286 41.6
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.2e-43 180.6 160 57.5
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.2e-43 180.6 172 57.6
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.5e-43 180.3 189 54.5
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.5e-43 180.3 171 57.9
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 7.6e-43 177.9 157 62.4
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.3e-42 177.2 177 53.7
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.7e-42 176.8 157 60.5
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 8.4e-42 174.5 206 48.5
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.9e-41 173.3 116 65.5
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.9e-41 173.3 159 61.0
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 2.4e-41 172.9 169 56.8
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 5.5e-41 171.8 99 77.8
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 5.1e-39 165.2 147 57.1
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.7e-39 164.9 107 72.9
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 6.9e-36 154.8 163 47.2
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.4e-35 152.5 152 50.0
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 7.6e-35 151.4 107 62.6
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 1.3e-34 150.6 173 48.6
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 2.2e-34 149.8 139 54.7
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.9e-34 149.4 163 47.2
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.9e-34 149.4 177 48.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 3.8e-34 149.1 177 50.3
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 6.5e-34 148.3 139 51.8
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.4e-33 147.1 162 46.9
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.9e-33 146.7 163 46.6
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 3.2e-33 146.0 181 43.6
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.2e-33 146.0 105 61.9
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 3.2e-33 146.0 139 54.0
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 3.2e-33 146.0 107 58.9
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 4.2e-33 145.6 107 62.6
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.2e-33 145.6 140 52.1
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 4.2e-33 145.6 107 62.6
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 4.2e-33 145.6 114 57.9
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 5.5e-33 145.2 108 57.4
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 7.1e-33 144.8 134 53.7
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 7.1e-33 144.8 119 58.0
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 7.1e-33 144.8 168 47.6
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 9.3e-33 144.4 106 63.2
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 9.3e-33 144.4 128 54.7
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 9.3e-33 144.4 128 54.7
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 9.3e-33 144.4 126 54.0
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 9.3e-33 144.4 108 60.2
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.2e-32 144.1 135 52.6
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.2e-32 144.1 107 61.7
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.2e-32 144.1 107 61.7
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.2e-32 144.1 105 61.9
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 1.2e-32 144.1 105 62.9
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.6e-32 143.7 162 48.1
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.6e-32 143.7 173 46.8
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.6e-32 143.7 185 43.8
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.1e-32 143.3 135 52.6
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 2.1e-32 143.3 135 53.3
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 3.5e-32 142.5 158 48.7
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 4.6e-32 142.1 189 43.4
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 4.6e-32 142.1 105 61.0
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 6.0e-32 141.7 105 61.9
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 7.9e-32 141.4 105 61.0
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 7.9e-32 141.4 105 61.0
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 7.9e-32 141.4 162 47.5
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.0e-31 141.0 158 49.4
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.0e-31 141.0 131 52.7
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 1.0e-31 141.0 167 47.3
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 1.3e-31 140.6 105 60.0
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 1.3e-31 140.6 112 62.5
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.3e-31 140.6 160 47.5
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 1.3e-31 140.6 183 43.7
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.3e-31 140.6 162 47.5
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.3e-31 140.6 133 51.9
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.3e-31 140.6 122 54.9
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 1.3e-31 140.6 131 52.7
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.8e-31 140.2 176 43.2
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 1.8e-31 140.2 142 50.7
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.3e-31 139.8 169 45.6
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.3e-31 139.8 174 50.0
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 2.3e-31 139.8 186 43.5
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 3.0e-31 139.4 105 60.0
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 3.0e-31 139.4 141 49.6
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 5.1e-31 138.7 159 48.4
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 5.1e-31 138.7 177 43.5
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 5.1e-31 138.7 145 48.3
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 6.7e-31 138.3 171 44.4
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 8.7e-31 137.9 105 60.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.5e-30 137.1 152 48.0
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.5e-30 137.1 152 48.0
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.5e-30 137.1 152 48.0
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.5e-30 137.1 105 58.1
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 2.5e-30 136.3 105 59.0
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 2.5e-30 136.3 164 47.0
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.3e-30 136.0 195 43.6
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 3.3e-30 136.0 143 48.3
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 3.3e-30 136.0 163 47.2
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 4.3e-30 135.6 152 48.0
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 4.3e-30 135.6 152 48.0
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 4.3e-30 135.6 152 48.0
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 4.3e-30 135.6 147 46.9
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.7e-30 135.2 105 59.0
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 7.4e-30 134.8 167 45.5
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 7.4e-30 134.8 105 59.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.6e-30 134.4 102 60.8
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 9.6e-30 134.4 182 42.9
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.1e-29 133.3 167 44.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.1e-29 133.3 138 50.7
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 2.1e-29 133.3 167 46.7
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 2.8e-29 132.9 136 51.5
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 8.2e-29 131.3 185 39.5
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 1.1e-28 131.0 138 50.7
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.4e-28 130.6 144 50.0
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 1.8e-28 130.2 188 42.6
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.1e-28 129.4 101 55.4
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 3.1e-28 129.4 110 52.7
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 1.2e-27 127.5 108 50.9
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 4.5e-27 125.6 62 88.7
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 5.9e-27 125.2 105 54.3
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 7.6e-27 124.8 82 75.6
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.0e-23 114.4 135 47.4
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.8e-23 113.6 135 47.4
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.1e-22 110.9 93 54.8
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 7.4e-22 108.2 219 37.0
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 6.3e-21 105.1 101 53.5
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 6.9e-20 101.7 118 50.0
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 4.2e-17 92.4 112 51.8
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 4.6e-16 89.0 107 46.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.1e-16 88.6 58 65.5
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 7.9e-16 88.2 58 65.5
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 5.1e-15 85.5 67 61.2
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 6.7e-15 85.1 108 46.3
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 3.3e-14 82.8 109 45.9
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 3.3e-14 82.8 59 59.3
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 5.7e-14 82.0 82 51.2
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 3.7e-13 79.3 109 46.8
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 5.3e-12 75.5 52 57.7
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 6.9e-12 75.1 99 40.4
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 3.4e-11 72.8 111 36.9
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 4.5e-11 72.4 113 41.6
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.2e-10 70.1 146 35.6
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 3.2e-09 66.2 107 36.4
Mapoly0021s0016 Marchantia polymorpha HOM05D003884 ORTHO05D004482 9.4e-09 64.7 152 27.6


User provided reference genes

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