Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.1e-306 1053.9 530 100.0
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.0e-253 877.9 541 83.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.2e-250 867.8 528 84.8
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.1e-249 865.5 493 87.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.5e-249 864.8 529 83.7
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.8e-245 852.4 526 82.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.1e-241 839.0 486 86.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.6e-241 837.8 460 89.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 3.0e-240 835.1 531 79.7
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.7e-238 828.2 480 85.0
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.8e-238 827.8 530 79.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 6.2e-238 827.4 534 80.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-237 826.6 531 79.7
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.6e-236 822.0 530 78.9
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.5e-236 821.2 545 77.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 5.8e-236 820.8 461 87.0
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 5.8e-236 820.8 476 85.1
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 7.6e-236 820.5 505 81.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.2e-235 818.9 525 80.2
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.9e-235 818.5 528 79.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.5e-235 817.4 525 78.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 8.4e-235 817.0 525 78.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.1e-234 816.6 536 79.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-234 816.6 525 78.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-234 816.6 528 79.2
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.4e-234 816.2 481 84.4
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.4e-234 816.2 526 80.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.9e-234 815.8 475 84.0
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.5e-234 815.5 476 83.8
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.1e-233 812.4 470 83.6
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 2.1e-233 812.4 524 78.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.1e-233 812.4 527 78.9
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 3.5e-233 811.6 525 79.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.6e-233 811.2 530 78.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.0e-232 810.1 529 79.2
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.3e-232 809.7 520 79.2
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.3e-232 808.9 538 77.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.0e-232 808.5 531 77.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.9e-232 808.1 528 75.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 5.1e-232 807.7 531 77.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 6.7e-232 807.4 525 77.3
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 8.7e-232 807.0 463 84.9
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.5e-231 805.4 461 84.8
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.6e-231 803.5 563 75.1
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.3e-230 803.1 461 84.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.3e-230 803.1 469 84.2
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.1e-230 802.4 534 77.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.8e-230 802.0 466 85.2
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.8e-230 802.0 494 79.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.8e-230 802.0 468 83.3
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.8e-230 802.0 459 84.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 4.8e-230 801.2 465 84.3
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.8e-229 799.3 523 77.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.4e-229 798.9 531 77.2
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.1e-229 798.5 475 82.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.1e-229 798.1 565 74.3
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.1e-229 798.1 492 79.3
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.0e-229 797.0 552 76.3
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 9.0e-229 797.0 526 76.8
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-228 796.2 477 82.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.6e-228 795.4 468 82.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.6e-228 795.4 512 77.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 7.6e-228 793.9 523 78.0
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.3e-227 793.1 523 75.7
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.2e-227 792.3 462 84.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.2e-227 792.3 485 81.2
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-226 789.3 483 81.2
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.5e-226 788.9 521 76.0
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 3.2e-226 788.5 515 75.9
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.2e-225 786.6 512 77.1
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 6.1e-225 784.3 523 75.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.8e-224 782.7 466 81.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.8e-224 782.7 520 76.3
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.0e-224 781.9 466 80.9
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.5e-223 779.6 507 77.7
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.9e-223 779.2 511 75.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 2.5e-223 778.9 472 80.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.3e-223 778.1 459 81.7
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 9.7e-223 776.9 511 74.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.7e-223 776.9 514 74.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.6e-222 776.2 529 75.2
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 511 74.4
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.2e-222 775.8 511 74.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.3e-222 774.2 511 74.8
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.1e-221 773.5 511 74.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.4e-221 773.1 511 74.2
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.8e-221 772.7 511 74.6
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.3e-221 771.2 515 76.3
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.9e-221 770.8 460 82.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-220 770.0 511 74.0
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.4e-220 768.5 522 73.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.2e-219 765.8 511 73.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.5e-218 762.3 492 76.4
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.2e-217 760.0 532 72.0
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.2e-217 760.0 486 77.4
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.7e-217 758.8 542 70.7
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 4.6e-217 758.1 523 72.5
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.6e-217 758.1 466 78.3
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.3e-216 755.7 510 75.3
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.6e-215 752.3 526 74.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.4e-213 745.7 519 71.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.7e-209 732.3 529 73.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.0e-208 728.8 518 69.9
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.1e-207 726.9 466 75.5
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.8e-206 722.2 467 74.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 8.5e-203 710.7 455 82.6
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 8.5e-203 710.7 459 76.9
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.1e-201 706.1 477 72.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.1e-201 706.1 406 84.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.7e-201 704.9 422 81.3
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.0e-200 703.7 460 73.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 7.5e-199 697.6 528 71.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.7e-198 696.4 457 72.4
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 9.1e-197 690.6 449 79.1
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.0e-195 687.2 478 72.2
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.9e-195 685.6 431 76.6
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.0e-195 684.9 452 79.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.0e-187 660.6 373 85.5
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-187 660.2 468 71.8
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.2e-186 655.2 373 84.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 3.0e-184 649.0 453 70.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 7.5e-183 644.4 394 82.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.7e-182 643.3 775 49.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.4e-181 640.2 453 66.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-177 626.7 477 67.1
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 6.1e-177 624.8 467 69.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-170 604.0 453 66.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 5.8e-167 591.7 359 84.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.3e-162 575.5 417 74.8
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 7.9e-124 448.4 319 73.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-118 431.4 369 63.4
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.8e-115 420.6 238 86.1
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.8e-105 386.7 293 66.6
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 9.7e-98 361.7 256 73.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.4e-96 357.8 458 40.6
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.7e-92 343.6 478 38.7
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 9.1e-88 328.6 462 39.2
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.6e-87 327.0 201 79.6
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 5.7e-82 309.3 228 69.7
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.2e-67 259.6 384 43.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.6e-60 238.0 131 85.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 6.8e-59 232.6 206 66.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 4.1e-56 223.4 167 67.7
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.9e-54 216.9 201 58.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 8.6e-54 215.7 165 67.3
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 6.6e-46 189.5 249 44.2
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-45 187.6 131 64.1
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 9.5e-45 185.7 123 68.3
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.3e-43 181.0 98 87.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.2e-43 179.9 373 31.1
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 6.0e-39 166.4 119 70.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.7e-38 164.9 95 86.3
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.2e-36 156.4 124 63.7
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.8e-33 147.1 80 87.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 6.4e-33 146.4 93 80.6
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.6e-28 130.6 294 30.6
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.4e-27 128.6 74 85.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 4.0e-27 127.1 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 2.0e-26 124.8 100 63.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 6.7e-14 83.2 56 60.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 9.0e-11 72.8 41 78.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 67 52.2
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.0e-10 71.6 123 43.1
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.6e-10 71.2 47 68.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.1e-07 61.6 38 78.9
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.0e-06 57.8 35 71.4


User provided reference genes

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