Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.0e-255 884.8 484 100.0
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.8e-157 558.9 492 67.7
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.2e-156 555.4 492 67.5
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 6.9e-151 538.1 540 61.7
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 1.5e-150 537.0 441 70.5
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 2.0e-142 510.0 448 71.2
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 3.6e-139 499.2 535 58.9
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 1.4e-138 497.3 536 59.0
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 3.4e-134 482.6 516 60.9
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.2e-132 475.7 500 60.8
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 3.0e-130 469.5 505 60.8
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.9e-130 469.2 497 60.2
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.3e-128 464.2 508 58.9
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.7e-128 463.8 480 61.7
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.1e-127 461.1 508 58.3
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 3.1e-127 459.5 506 58.9
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 9.1e-127 458.0 523 57.9
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 4.5e-126 455.7 523 57.7
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 4.5e-126 455.7 504 60.3
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 7.7e-126 454.9 502 57.8
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 2.3e-122 443.4 502 58.2
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.3e-122 443.4 509 58.0
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 5.2e-122 442.2 503 56.1
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 1.1e-121 441.0 507 56.6
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 1.5e-121 440.7 523 57.6
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 2.0e-121 440.3 501 55.9
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 2.0e-121 440.3 493 58.8
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 1.7e-120 437.2 506 58.3
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.8e-120 436.4 502 58.6
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 3.7e-120 436.0 502 58.6
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.7e-120 436.0 502 58.6
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 4.8e-120 435.6 549 53.7
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 1.4e-119 434.1 515 57.3
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.6e-118 430.6 514 55.1
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 2.6e-118 429.9 514 58.4
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 3.8e-117 426.0 516 54.3
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 3.8e-117 426.0 521 58.7
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 1.5e-116 424.1 515 57.3
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 2.5e-116 423.3 516 57.0
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 3.2e-116 422.9 511 54.2
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 7.2e-116 421.8 467 58.0
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 1.2e-115 421.0 527 54.8
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.6e-115 419.5 493 58.8
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 3.6e-115 419.5 511 55.6
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 4.0e-114 416.0 479 55.3
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.2e-114 415.6 503 56.1
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 8.8e-114 414.8 513 57.9
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 1.2e-113 414.5 509 56.2
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 1.5e-113 414.1 509 54.6
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 6.3e-112 408.7 483 56.1
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 1.8e-111 407.1 521 55.9
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 7.0e-111 405.2 505 52.9
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 2.7e-110 403.3 518 52.5
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 2.7e-110 403.3 523 52.6
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 3.5e-110 402.9 509 55.6
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 5.9e-110 402.1 496 55.0
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 7.7e-110 401.7 454 58.1
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 1.0e-109 401.4 479 55.9
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 1.7e-109 400.6 511 53.4
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 2.2e-109 400.2 484 58.7
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 5.0e-109 399.1 522 51.9
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 1.5e-108 397.5 429 58.5
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 1.9e-108 397.1 504 52.2
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 2.1e-107 393.7 454 56.6
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 8.0e-107 391.7 504 54.6
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 8.0e-107 391.7 453 57.2
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 1.4e-106 391.0 512 55.3
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 5.2e-106 389.0 499 53.1
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 6.8e-106 388.7 515 55.1
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 5.7e-105 385.6 507 55.2
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.3e-104 384.4 488 54.5
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.1e-103 381.3 457 55.1
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 4.1e-103 379.4 499 51.7
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 2.7e-102 376.7 509 51.9
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 4.5e-102 375.9 525 51.0
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 2.3e-101 373.6 513 50.3
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 2.8e-99 366.7 559 49.4
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.2e-97 361.3 499 51.1
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 2.6e-97 360.1 505 49.3
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 7.5e-97 358.6 502 53.0
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 1.3e-96 357.8 484 53.5
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 1.4e-95 354.4 505 48.9
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 7.0e-95 352.1 283 71.7
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 1.6e-94 350.9 501 52.9
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 2.7e-94 350.1 488 51.4
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 6.6e-93 345.5 478 52.3
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.1e-92 344.7 297 66.0
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.6e-91 340.9 457 50.5
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.0e-90 336.3 472 53.0
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 4.0e-90 336.3 455 52.7
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 2.6e-89 333.6 516 47.5
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 4.4e-89 332.8 464 54.3
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 9.8e-89 331.6 441 52.4
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 4.9e-88 329.3 503 47.9
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.4e-87 327.0 334 59.9
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 3.2e-87 326.6 512 48.2
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 4.6e-86 322.8 441 51.5
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 3.0e-85 320.1 533 47.3
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 1.6e-83 314.3 460 50.9
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 7.0e-79 298.9 286 59.8
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 2.5e-76 290.4 368 50.5
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 2.8e-75 287.0 300 59.7
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 3.6e-75 286.6 493 47.9
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 6.2e-75 285.8 536 42.0
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.4e-74 284.6 482 44.0
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 2.0e-65 254.2 594 37.5
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.7e-64 251.1 292 56.2
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 2.2e-64 250.8 497 41.4
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 1.0e-61 241.9 504 39.5
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 3.4e-57 226.9 154 76.6
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 5.6e-52 209.5 253 53.8
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 6.0e-46 189.5 293 48.5
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 8.1e-43 179.1 504 35.7
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 8.7e-37 159.1 164 59.8
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 1.3e-35 155.2 153 53.6
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 5.3e-34 149.8 132 67.4
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 5.8e-33 146.4 159 59.7
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 6.1e-30 136.3 72 93.1
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 8.7e-29 132.5 94 68.1
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.3e-28 130.6 147 57.1
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.2e-27 127.9 72 88.9
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 4.1e-26 123.6 560 28.4
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 1.7e-24 118.2 297 37.7
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 1.0e-21 109.0 470 28.5
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.3e-19 102.1 537 26.6
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 8.2e-19 99.4 425 30.4
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 3.4e-17 94.0 99 59.6
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.1e-15 89.0 313 30.0
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-12 76.6 93 38.7
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.4e-10 72.0 57 61.4
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 9.1e-10 69.3 45 73.3
PRCOL_00000793 Prasinoderma coloniale HOM05D002462 ORTHO05D007680 6.5e-08 63.2 139 30.9
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 3.2e-07 60.8 122 31.1
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.6e-06 58.5 125 25.6
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 2.7e-06 57.8 203 25.6
Nitab4.5_0003401g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 2.7e-06 57.8 122 31.1
Haze_11686 Corylus avellana HOM05D000371 ORTHO05D001484 4.7e-06 57.0 126 31.7
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 8.0e-06 56.2 122 32.8
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 8.0e-06 56.2 122 28.7


User provided reference genes

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