Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-150 535.0 261 100.0
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 5.5e-102 374.8 241 80.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.8e-100 369.8 241 79.3
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.4e-99 364.4 214 85.0
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.1e-92 341.7 185 90.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 2.8e-90 335.9 208 79.8
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.8e-89 333.2 209 76.6
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.8e-87 325.5 209 74.6
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.9e-86 323.2 225 70.7
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 2.5e-86 322.8 211 76.8
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.2e-86 322.4 209 74.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.2e-86 322.0 209 74.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 7.2e-86 321.2 215 74.4
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.1e-85 319.7 203 75.9
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 6.1e-85 318.2 212 72.6
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 3.9e-84 315.5 203 74.9
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.1e-83 313.9 211 73.0
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.5e-83 313.5 202 75.2
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.5e-83 313.5 216 71.8
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.3e-83 312.0 210 72.9
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 5.7e-83 311.6 195 76.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 2.8e-82 309.3 204 75.5
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 6.3e-82 308.1 211 73.5
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.8e-81 306.6 185 77.3
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.8e-81 306.6 176 81.2
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.1e-81 305.8 211 71.6
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 4.1e-81 305.4 207 72.0
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 5.3e-81 305.1 243 65.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 9.0e-81 304.3 220 69.5
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 9.0e-81 304.3 186 77.4
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.2e-80 303.9 214 71.0
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.6e-80 302.8 183 78.7
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.7e-80 301.2 210 74.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.0e-79 300.8 215 71.6
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.2e-79 299.7 211 71.6
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 3.8e-79 298.9 192 74.5
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 5.0e-79 298.5 226 66.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 6.5e-79 298.1 214 71.5
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 6.5e-79 298.1 214 71.5
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 8.5e-79 297.7 193 73.1
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.9e-78 296.6 195 74.4
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.2e-78 295.8 200 70.5
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 3.2e-78 295.8 206 68.4
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.2e-78 294.7 214 71.0
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 9.4e-78 294.3 186 81.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.2e-77 293.9 192 73.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.2e-77 293.9 198 72.7
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 2.1e-77 293.1 209 71.8
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.6e-77 292.4 197 72.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.6e-77 292.0 204 70.1
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.1e-77 291.6 183 76.5
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 7.9e-77 291.2 185 74.1
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.0e-76 290.8 200 70.5
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.4e-76 290.4 185 73.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.0e-76 289.3 209 70.8
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 3.0e-76 289.3 199 69.8
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.9e-76 288.9 180 75.6
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 6.7e-76 288.1 205 67.8
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.5e-75 287.0 196 73.5
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.5e-75 286.2 184 73.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 5.7e-75 285.0 206 67.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.7e-74 283.5 194 72.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.2e-74 283.1 206 66.0
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.2e-74 283.1 210 67.6
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.8e-74 282.0 192 72.4
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.4e-73 280.4 206 68.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.4e-73 279.6 208 66.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 6.9e-73 278.1 193 67.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.2e-72 277.3 193 67.9
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-72 277.3 208 66.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.5e-72 276.9 201 66.2
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.6e-72 276.2 201 65.7
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 3.4e-72 275.8 177 74.6
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 3.4e-72 275.8 180 74.4
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.4e-72 275.8 202 68.3
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 4.5e-72 275.4 181 75.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.5e-72 275.4 208 65.9
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 5.9e-72 275.0 212 65.6
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.0e-71 274.2 187 70.1
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.7e-71 273.5 202 68.3
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.8e-71 272.3 174 77.6
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 8.5e-71 271.2 174 71.8
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 8.5e-71 271.2 193 66.3
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 5.5e-70 268.5 192 68.8
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.2e-69 267.3 206 65.0
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 7.9e-69 264.6 209 64.6
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 3.0e-68 262.7 175 74.3
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 5.1e-68 261.9 171 70.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-68 261.5 195 64.6
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.0e-67 260.0 197 63.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 2.0e-67 260.0 173 69.4
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.4e-67 258.8 214 64.5
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.1e-65 252.3 205 62.0
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.9e-63 246.1 205 61.5
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 6.5e-63 245.0 152 76.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 8.5e-63 244.6 159 71.7
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.5e-62 243.8 205 61.5
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.6e-61 240.4 200 60.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-61 240.4 200 60.0
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.6e-61 239.2 135 86.7
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.1e-61 238.4 200 58.5
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.8e-60 236.9 168 69.0
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.8e-60 236.9 137 81.0
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 5.2e-60 235.3 200 58.5
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 2.6e-59 233.0 180 60.6
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 9.7e-59 231.1 177 63.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.7e-58 230.3 209 57.9
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 4.8e-58 228.8 178 61.8
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 6.3e-58 228.4 178 59.0
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.4e-57 226.5 184 60.9
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 5.3e-57 225.3 184 62.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.6e-56 223.8 174 61.5
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.9e-56 221.9 179 59.2
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 6.5e-55 218.4 148 69.6
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 4.2e-54 215.7 193 57.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.6e-53 212.6 168 66.7
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-50 204.1 193 55.4
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.0e-47 194.5 181 55.8
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.8e-47 192.6 193 53.9
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.6e-45 186.0 178 53.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 5.9e-40 168.7 114 66.7
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.8e-39 166.0 209 47.8
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-38 162.9 206 47.1
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 7.3e-38 161.8 165 49.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.6e-37 160.6 115 67.8
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 3.7e-34 149.4 108 62.0
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.8e-29 133.3 75 81.3
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.8e-29 133.3 80 78.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-21 107.8 56 87.5
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 8.1e-21 105.1 65 69.2
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.6e-19 100.1 64 71.9
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.2e-10 70.5 39 82.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.1e-09 68.2 39 82.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 5.4e-09 65.9 47 61.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 4.6e-08 62.8 37 75.7
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.0e-07 61.6 51 52.9
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 4.3e-06 56.2 31 80.6


User provided reference genes

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