Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.4e-46 187.2 88 100.0
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.4e-46 187.2 88 100.0
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.5e-43 179.1 87 95.4
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.5e-43 179.1 87 95.4
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.5e-43 179.1 87 95.4
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.5e-43 179.1 85 97.6
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.5e-43 179.1 87 95.4
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.5e-43 178.3 85 97.6
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 2.5e-43 178.3 85 96.5
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.5e-43 178.3 85 96.5
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.5e-43 178.3 85 97.6
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.5e-43 178.3 85 97.6
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 3.3e-43 177.9 87 94.3
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.3e-43 177.9 85 96.5
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.3e-43 177.6 85 96.5
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.3e-43 177.6 85 96.5
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.3e-43 177.6 85 96.5
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 4.3e-43 177.6 85 96.5
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 4.3e-43 177.6 87 94.3
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 7.3e-43 176.8 85 97.6
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 9.6e-43 176.4 82 100.0
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 9.6e-43 176.4 82 100.0
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 9.6e-43 176.4 82 100.0
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.3e-42 176.0 86 95.3
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.3e-42 176.0 85 95.3
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.3e-42 176.0 85 96.5
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.3e-42 176.0 87 94.3
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 1.3e-42 176.0 87 93.1
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.6e-42 175.6 85 95.3
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.6e-42 175.6 86 95.3
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.1e-42 175.3 82 98.8
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 2.1e-42 175.3 85 95.3
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.8e-42 174.9 82 98.8
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 2.8e-42 174.9 85 95.3
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.8e-42 174.9 85 95.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.8e-42 174.9 86 95.3
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.8e-42 174.9 81 100.0
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.8e-42 174.9 82 98.8
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 2.8e-42 174.9 85 96.5
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.6e-42 174.5 82 97.6
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 3.6e-42 174.5 82 98.8
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-42 174.5 82 98.8
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-42 174.5 82 98.8
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.6e-42 174.5 82 98.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.8e-42 174.1 82 98.8
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.8e-42 174.1 82 98.8
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 4.8e-42 174.1 85 95.3
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 6.2e-42 173.7 82 97.6
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 6.2e-42 173.7 85 94.1
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 6.2e-42 173.7 81 98.8
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 6.2e-42 173.7 81 98.8
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 6.2e-42 173.7 81 98.8
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 6.2e-42 173.7 81 98.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 6.2e-42 173.7 81 98.8
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 6.2e-42 173.7 82 97.6
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 6.2e-42 173.7 82 97.6
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 6.2e-42 173.7 81 98.8
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 8.1e-42 173.3 87 94.3
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 8.1e-42 173.3 82 97.6
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 8.1e-42 173.3 81 98.8
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 8.1e-42 173.3 82 97.6
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 1.1e-41 172.9 82 97.6
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.1e-41 172.9 84 95.2
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.1e-41 172.9 85 92.9
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.1e-41 172.9 85 94.1
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.1e-41 172.9 86 95.3
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.1e-41 172.9 86 95.3
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.4e-41 172.6 81 98.8
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 1.4e-41 172.6 85 92.9
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.4e-41 172.6 85 94.1
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 98.8
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 2.4e-41 171.8 82 97.6
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.4e-41 171.8 85 94.1
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.1e-41 171.4 81 98.8
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 4.0e-41 171.0 82 96.3
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 4.0e-41 171.0 82 97.6
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 4.0e-41 171.0 86 93.0
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 5.3e-41 170.6 82 95.1
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.3e-41 170.6 86 90.7
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 6.9e-41 170.2 86 91.9
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 6.9e-41 170.2 81 97.5
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 6.9e-41 170.2 81 97.5
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 6.9e-41 170.2 82 96.3
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 6.9e-41 170.2 86 93.0
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 9.0e-41 169.9 86 93.0
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 9.0e-41 169.9 82 96.3
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.0e-41 169.9 85 91.8
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 1.2e-40 169.5 85 91.8
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 1.2e-40 169.5 82 95.1
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.2e-40 169.5 82 95.1
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 1.2e-40 169.5 86 91.9
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.2e-40 169.5 82 95.1
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.0e-40 168.7 82 95.1
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-40 168.7 87 93.1
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.0e-40 168.7 80 96.2
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.0e-40 168.7 82 96.3
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 2.6e-40 168.3 81 96.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 2.6e-40 168.3 81 96.3
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.4e-40 167.9 82 95.1
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 3.4e-40 167.9 80 96.2
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.4e-40 167.9 81 95.1
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 4.5e-40 167.5 87 93.1
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 4.5e-40 167.5 86 90.7
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 4.5e-40 167.5 79 97.5
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.8e-40 167.2 87 92.0
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 5.8e-40 167.2 81 95.1
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 5.8e-40 167.2 82 95.1
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 7.6e-40 166.8 82 95.1
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 7.6e-40 166.8 80 96.2
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 9.9e-40 166.4 82 95.1
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 9.9e-40 166.4 84 90.5
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.3e-39 166.0 83 92.8
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.7e-39 165.6 87 92.0
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 1.7e-39 165.6 87 90.8
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 4.9e-39 164.1 82 93.9
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 6.4e-39 163.7 95 84.2
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 8.4e-39 163.3 86 89.5
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 8.4e-39 163.3 82 89.0
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.1e-38 162.9 82 90.2
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 1.1e-38 162.9 87 89.7
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.1e-38 162.9 98 82.7
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 1.1e-38 162.9 81 91.4
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.9e-38 162.2 89 87.6
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 1.9e-38 162.2 75 98.7
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 4.2e-38 161.0 87 88.5
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 5.4e-38 160.6 77 93.5
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 7.1e-38 160.2 80 90.0
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 7.1e-38 160.2 80 90.0
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 7.1e-38 160.2 78 94.9
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 1.2e-37 159.5 76 96.1
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.1e-37 158.7 86 84.9
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.7e-37 158.3 78 91.0
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 3.5e-37 157.9 76 92.1
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.5e-37 157.9 78 91.0
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 7.9e-37 156.8 75 96.0
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.3e-36 155.2 84 85.7
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 2.3e-36 155.2 81 86.4
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 3.0e-36 154.8 83 90.4
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 5.1e-36 154.1 81 87.7
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 5.1e-36 154.1 81 87.7
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 8.7e-36 153.3 84 85.7
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.1e-35 152.9 74 91.9
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 3.3e-35 151.4 77 90.9
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 4.3e-35 151.0 82 82.9
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 1.6e-34 149.1 74 89.2
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 1.6e-34 149.1 74 89.2
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 1.6e-34 149.1 74 89.2
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 1.6e-34 149.1 74 89.2
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 3.4e-32 141.4 70 88.6
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 3.4e-32 141.4 78 79.5
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.5e-32 141.0 86 82.6
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.2e-29 132.9 91 70.3
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.2e-29 132.9 68 85.3
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.6e-29 132.5 67 91.0
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.8e-28 129.0 69 79.7
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 8.7e-28 126.7 64 89.1
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 2.5e-27 125.2 60 95.0
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.4e-25 119.4 60 86.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.6e-24 115.2 63 82.5
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 2.7e-21 105.1 55 90.9
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 6.1e-21 104.0 77 62.3
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 6.1e-21 104.0 48 100.0
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 5.3e-17 90.9 44 93.2
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 2.6e-16 88.6 63 68.3
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 4.5e-16 87.8 47 87.2
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 1.9e-14 82.4 86 52.3
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 2.5e-14 82.0 46 80.4
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.2e-14 81.3 38 92.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.2e-14 80.5 67 64.2
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.4e-14 80.1 37 100.0
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.6e-13 79.3 47 83.0
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 3.6e-13 78.2 53 73.6
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 6.1e-13 77.4 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 6.1e-13 77.4 39 82.1
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-13 77.4 59 66.1
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.0e-11 72.4 38 92.1
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.3e-10 69.7 38 86.8
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.3e-10 67.4 51 60.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.1e-09 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.6e-08 62.0 38 84.2
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.4e-06 56.2 29 86.2


User provided reference genes

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