Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027855 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D112865 5.2e-84 314.3 156 100.0
CSS0046721 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 2.6e-22 109.4 74 78.4
TAR622G0036 Trochodendron aralioides HOM05D001366 ORTHO05D003220 2.8e-21 105.9 74 74.3
vmacro01143 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 2.8e-21 105.9 74 74.3
CSS0021224 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 3.7e-21 105.5 74 77.0
ECA234G4650 Erigeron canadensis HOM05D001366 ORTHO05D003220 1.1e-20 104.0 96 58.3
MSTRG.577 Avicennia marina HOM05D001366 ORTHO05D003220 1.4e-20 103.6 74 74.3
Rhsim12G0113000 Rhododendron simsii HOM05D001366 ORTHO05D003220 1.4e-20 103.6 74 73.0
SalBow2G1604 Salvia bowleyana HOM05D001366 ORTHO05D003220 1.4e-20 103.6 74 73.0
ECA233G2601 Erigeron canadensis HOM05D001366 ORTHO05D003220 1.8e-20 103.2 96 56.2
Dinv15253 Davidia involucrata HOM05D001366 ORTHO05D003220 2.4e-20 102.8 74 71.6
Hma1.2p1_0223F.1_g094185 Hydrangea macrophylla HOM05D001366 ORTHO05D003220 2.4e-20 102.8 74 73.0
Oeu038612.1 Olea europaea HOM05D001366 ORTHO05D003220 4.1e-20 102.1 74 73.0
vmacro16213 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 4.1e-20 102.1 74 71.6
Lj4g0012667 Lotus japonicus HOM05D001366 ORTHO05D003220 5.3e-20 101.7 74 73.0
QL03p058693 Quercus lobata HOM05D001366 ORTHO05D003220 5.3e-20 101.7 74 71.6
Rhsim12G0042000 Rhododendron simsii HOM05D001366 ORTHO05D003220 5.3e-20 101.7 74 73.0
Actinidia37411 Actinidia chinensis HOM05D001366 ORTHO05D003220 7.0e-20 101.3 74 73.0
Ca_22500_v3 Cicer arietinum L. HOM05D001366 ORTHO05D003220 7.0e-20 101.3 74 71.6
Nitab4.5_0002255g0040 Nicotiana tabacum HOM05D001366 ORTHO05D003220 7.0e-20 101.3 74 71.6
Potri.010G044100 Populus trichocarpa HOM05D001366 ORTHO05D003220 7.0e-20 101.3 74 71.6
Dinv24813 Davidia involucrata HOM05D001366 ORTHO05D003220 9.1e-20 100.9 74 71.6
Lsat_1_v5_gn_8_153980 Lactuca sativa HOM05D001366 ORTHO05D003220 9.1e-20 100.9 81 64.2
Nitab4.5_0007943g0010 Nicotiana tabacum HOM05D001366 ORTHO05D003220 9.1e-20 100.9 74 70.3
Actinidia15071 Actinidia chinensis HOM05D001366 ORTHO05D003220 1.2e-19 100.5 74 70.3
Cfa009191 Carpinus fangiana HOM05D001366 ORTHO05D003220 1.2e-19 100.5 74 70.3
Haze_12225 Corylus avellana HOM05D001366 ORTHO05D003220 1.2e-19 100.5 74 70.3
Aqoxy3G02840 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 1.5e-19 100.1 74 70.3
MSTRG.7915 Avicennia marina HOM05D001366 ORTHO05D003220 1.5e-19 100.1 74 70.3
Duzib268G0758 Durio zibethinus HOM05D001366 ORTHO05D003220 1.5e-19 100.1 74 70.3
Gohir.D01G150200 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.5e-19 100.1 74 68.9
Gorai.002G186200 Gossypium raimondii HOM05D001366 ORTHO05D003220 1.5e-19 100.1 74 68.9
HanXRQChr12g0371851 Helianthus annuus HOM05D001366 ORTHO05D003220 1.5e-19 100.1 81 64.2
Thecc.02G256300 Theobroma cacao HOM05D001366 ORTHO05D003220 1.5e-19 100.1 74 70.3
DCAR_031129 Daucus carota HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 70.3
Migut.L01476 Erythranthe guttata HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 70.3
Gohir.A01G159900 Gossypium hirsutum HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 68.9
Lsat_1_v5_gn_4_4920 Lactuca sativa HOM05D001366 ORTHO05D003220 2.0e-19 99.8 81 63.0
Peaxi162Scf00515g00133 Petunia axillaris HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 70.3
Phvul.003G062900 Phaseolus vulgaris HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 70.3
Psat4g114240 Pisum sativum HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 71.6
Sabra10G0023900 Salix brachista HOM05D001366 ORTHO05D003220 2.0e-19 99.8 74 70.3
TWI75G1447 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 2.0e-19 99.8 77 67.5
unitig_26.g10358 Utricularia gibba HOM05D001366 ORTHO05D003220 2.0e-19 99.8 73 69.9
arahy.Tifrunner.gnm1.ann1.52KDTF Arachis hypogaea HOM05D001366 ORTHO05D003220 2.6e-19 99.4 74 70.3
arahy.Tifrunner.gnm1.ann1.N2L19B Arachis hypogaea HOM05D001366 ORTHO05D003220 2.6e-19 99.4 74 70.3
CAN.G447.9 Capsicum annuum HOM05D001366 ORTHO05D003220 2.6e-19 99.4 74 70.3
Glyma.18G142500 Glycine max HOM05D001366 ORTHO05D003220 2.6e-19 99.4 74 70.3
Lalb_Chr09g0334861 Lupinus albus HOM05D001366 ORTHO05D003220 2.6e-19 99.4 74 70.3
Potri.008G188150 Populus trichocarpa HOM05D001366 ORTHO05D003220 2.6e-19 99.4 74 70.3
Glyma.08G283700 Glycine max HOM05D001366 ORTHO05D003220 3.5e-19 99.0 74 68.9
MD16G1097800 Malus domestica HOM05D001366 ORTHO05D003220 3.5e-19 99.0 71 71.8
SGA_v2.0_scaffold228G43260 Striga asiatica HOM05D001366 ORTHO05D003220 3.5e-19 99.0 74 71.6
TPR.G23137 Trifolium pratense HOM05D001366 ORTHO05D003220 3.5e-19 99.0 74 68.9
BcaC07g38588 Brassica carinata HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
BcaC07g38627 Brassica carinata HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
A08p33790 Brassica napus HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
C08p13950 Brassica napus HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
BolC8t49029H Brassica oleracea HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
BraA08t35295Z Brassica rapa HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
CiPaw.05G184800 Carya illinoinensis HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 70.3
Gohir.A12G144400 Gossypium hirsutum HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
Gohir.D12G149000 Gossypium hirsutum HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
Gorai.008G160400 Gossypium raimondii HOM05D001366 ORTHO05D003220 4.5e-19 98.6 74 68.9
CDE06G0295 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 68.9
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 68.9
Medtr8g069760 Medicago truncatula HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 68.9
Prupe.1G248900 Prunus persica HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 68.9
Sc04g0009380 Simmondsia chinensis HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 68.9
TWI18G0188 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 68.9
GSVIVG01013806001 Vitis vinifera HOM05D001366 ORTHO05D003220 5.9e-19 98.2 74 70.3
CANSAT01G0055 Cannabis sativa HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
Cpa.g.sc69.90 Carica papaya HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 67.6
FvH4_4g25800 Fragaria vesca HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
FAN07G2766 Fragaria x ananassa HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
FAN12G2701 Fragaria x ananassa HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
FAN12G3618 Fragaria x ananassa HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
FAN17G2901 Fragaria x ananassa HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
FAN22G0388 Fragaria x ananassa HOM05D001366 ORTHO05D003220 7.7e-19 97.8 74 68.9
Ah.03g133220 Amaranthus hybridus HOM05D001366 ORTHO05D003220 1.0e-18 97.4 77 64.9
MD13G1096800 Malus domestica HOM05D001366 ORTHO05D003220 1.0e-18 97.4 71 69.0
Nn4g22680 Nelumbo nucifera HOM05D001366 ORTHO05D003220 1.0e-18 97.4 74 68.9
Thhalv10006565m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 1.3e-18 97.1 74 67.6
HanXRQChr12g0384161 Helianthus annuus HOM05D001366 ORTHO05D003220 1.3e-18 97.1 77 66.2
Sp1g09460 Schrenkiella parvula HOM05D001366 ORTHO05D003220 1.3e-18 97.1 74 67.6
Solyc05g005020.4 Solanum lycopersicum HOM05D001366 ORTHO05D003220 1.3e-18 97.1 74 68.9
Sopen05g001030 Solanum pennellii HOM05D001366 ORTHO05D003220 1.3e-18 97.1 74 68.9
Aa31LG1G4070 Aethionema arabicum HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
AL1G21690 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
AT1G10760 Arabidopsis thaliana HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
BcaB08g37373 Brassica carinata HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
BcaNung06799 Brassica carinata HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
A09p64660 Brassica napus HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
BolC8t52392H Brassica oleracea HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
BraA09t41826Z Brassica rapa HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
Carub.0001s1031 Capsella rubella HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
CARHR010980 Cardamine hirsuta HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
Cc11_g15490 Coffea canephora HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 70.3
Hund06013 Selenicereus undatus HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 67.6
TAR374G1700 Trochodendron aralioides HOM05D001366 ORTHO05D003220 1.7e-18 96.7 74 66.2
Ah.02g130140 Amaranthus hybridus HOM05D001366 ORTHO05D003220 2.2e-18 96.3 74 66.2
RcHm_v2.0_Chr4g0433251 Rosa chinensis HOM05D001366 ORTHO05D003220 2.2e-18 96.3 74 67.6
Sabra08G0142500 Salix brachista HOM05D001366 ORTHO05D003220 2.2e-18 96.3 74 68.9
Sed0024840 Sechium edule HOM05D001366 ORTHO05D003220 2.2e-18 96.3 74 68.9
AUR62005429 Chenopodium quinoa HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 66.2
AUR62014090 Chenopodium quinoa HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 66.2
ClCG05G025580 Citrullus lanatus HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
MELO3C011972.2 Cucumis melo HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
CsaV3_5G031320 Cucumis sativus L. HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
Manes.13G026800 Manihot esculenta HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
Os06g0498400 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
Sed0006405 Sechium edule HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
PGSC0003DMG400007677 Solanum tuberosum HOM05D001366 ORTHO05D003220 2.9e-18 95.9 74 68.9
Ciclev10030499m.g Citrus clementina HOM05D001366 ORTHO05D003220 3.8e-18 95.5 75 65.3
PGR119G2090 Punica granatum HOM05D001366 ORTHO05D003220 3.8e-18 95.5 74 67.6
Zm00001eb278140 Zea mays HOM05D001366 ORTHO05D003220 3.8e-18 95.5 74 68.9
CDE04G3560 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 5.0e-18 95.1 74 67.6
EL10Ac6g13726 Beta vulgaris HOM05D001366 ORTHO05D003220 6.5e-18 94.7 74 68.9
THA.LOC104823655 Tarenaya hassleriana HOM05D001366 ORTHO05D003220 6.5e-18 94.7 74 64.9
Atru.chr11.2087 Acer truncatum HOM05D001366 ORTHO05D003220 1.1e-17 94.0 74 64.9
Lj6C809G13 Lonicera japonica HOM05D001366 ORTHO05D003220 1.1e-17 94.0 74 66.2
DCAR_007066 Daucus carota HOM05D001366 ORTHO05D003220 1.4e-17 93.6 77 64.9
PSO832G0819 Papaver somniferum HOM05D001366 ORTHO05D003220 1.4e-17 93.6 74 66.2
C08p48530 Brassica napus HOM05D001366 ORTHO05D003220 1.9e-17 93.2 74 66.2
ATR1152G017 Amborella trichopoda HOM05D001366 ORTHO05D003220 7.2e-17 91.3 74 63.5
Eucgr.H02531 Eucalyptus grandis HOM05D001366 ORTHO05D003220 7.2e-17 91.3 74 66.2
MBI16_g14597_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 7.2e-17 91.3 68 69.1
SEGI_33023 Sequoiadendron giganteum HOM05D001366 ORTHO05D003220 1.2e-16 90.5 71 63.4
HPP92_003084 Vanilla planifolia HOM05D001366 ORTHO05D003220 1.2e-16 90.5 74 63.5
PSO063G5092 Papaver somniferum HOM05D001366 ORTHO05D003220 8.0e-16 87.8 74 63.5
SEGI_32533 Sequoiadendron giganteum HOM05D001366 ORTHO05D003220 1.4e-15 87.0 81 59.3
Thecc.08G073900 Theobroma cacao HOM05D001366 ORTHO05D003220 3.9e-15 85.5 81 53.1
Manes.05G189000 Manihot esculenta HOM05D001366 ORTHO05D003220 1.1e-14 84.0 71 57.7
Mapoly0038s0029 Marchantia polymorpha HOM05D001366 ORTHO05D003220 1.1e-14 84.0 71 63.4
Hma1.2p1_0125F.1_g058690 Hydrangea macrophylla HOM05D001366 ORTHO05D003220 1.5e-14 83.6 71 57.7
PSO675G6980 Papaver somniferum HOM05D001366 ORTHO05D003220 2.6e-14 82.8 81 54.3
COL.COLO4_35285 Corchorus olitorius HOM05D001366 ORTHO05D003220 3.3e-14 82.4 71 57.7
Gohir.D05G221000 Gossypium hirsutum HOM05D001366 ORTHO05D003220 3.3e-14 82.4 71 59.2
Gorai.009G228100 Gossypium raimondii HOM05D001366 ORTHO05D003220 3.3e-14 82.4 71 59.2
Nn5g29817 Nelumbo nucifera HOM05D001366 ORTHO05D003220 4.4e-14 82.0 81 53.1
Pp3c3_11200 Physcomitrium patens HOM05D001366 ORTHO05D003220 4.4e-14 82.0 75 58.7
Pp3c8_6520 Physcomitrium patens HOM05D001366 ORTHO05D003220 4.4e-14 82.0 71 62.0
Pp3c8_6536 Physcomitrium patens HOM05D001366 ORTHO05D003220 4.4e-14 82.0 71 62.0
Dinv42591 Davidia involucrata HOM05D001366 ORTHO05D003220 5.7e-14 81.6 71 54.9
Gohir.A05G216400 Gossypium hirsutum HOM05D001366 ORTHO05D003220 5.7e-14 81.6 71 59.2
QL09p018643 Quercus lobata HOM05D001366 ORTHO05D003220 5.7e-14 81.6 71 56.3
THA.LOC104799855 Tarenaya hassleriana HOM05D001366 ORTHO05D003220 5.7e-14 81.6 71 57.7
CBR_g39013 Chara braunii HOM05D001366 ORTHO05D003220 7.4e-14 81.3 71 60.6
SMO347G0598 Selaginella moellendorffii HOM05D001366 ORTHO05D003220 1.3e-13 80.5 74 60.8
vmacro04624 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 1.3e-13 80.5 71 56.3
Ciclev10017434m.g Citrus clementina HOM05D001366 ORTHO05D003220 2.2e-13 79.7 71 54.9
MBI16_g27903_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 2.8e-13 79.3 68 58.8
MD08G1203800 Malus domestica HOM05D001366 ORTHO05D003220 2.8e-13 79.3 74 54.1
Atru.chr13.974 Acer truncatum HOM05D001366 ORTHO05D003220 3.7e-13 79.0 71 54.9
AagrBONN_evm.TU.Sc2ySwM_344.4529 Anthoceros agrestis HOM05D001366 ORTHO05D003220 3.7e-13 79.0 74 58.1
Aqoxy6G00668_Aqoxy6G00669 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 3.7e-13 79.0 81 53.1
CiPaw.07G163000 Carya illinoinensis HOM05D001366 ORTHO05D003220 3.7e-13 79.0 71 54.9
PRCOL_00000768 Prasinoderma coloniale HOM05D001366 ORTHO05D003220 3.7e-13 79.0 72 59.7
Prupe.1G536100 Prunus persica HOM05D001366 ORTHO05D003220 4.8e-13 78.6 71 57.7
Cre07.g319300 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D003220 6.3e-13 78.2 74 56.8
Cre07.g319340 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D003220 6.3e-13 78.2 74 56.8
ATR0767G073 Amborella trichopoda HOM05D001366 ORTHO05D003220 1.8e-12 76.6 81 46.9
CARHR231840 Cardamine hirsuta HOM05D001366 ORTHO05D003220 4.1e-12 75.5 71 54.9
Carub.0007s1662 Capsella rubella HOM05D001366 ORTHO05D003220 9.1e-12 74.3 71 52.1
Sp7g22430 Schrenkiella parvula HOM05D001366 ORTHO05D003220 9.1e-12 74.3 71 53.5
MCO16G440 Micromonas commoda HOM05D001366 ORTHO05D003220 1.2e-11 73.9 69 53.6
AagrBONN_evm.TU.Sc2ySwM_362.4 Anthoceros agrestis HOM05D001366 ORTHO05D003220 1.6e-11 73.6 70 55.7
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 1.6e-11 73.6 71 52.1
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 1.6e-11 73.6 71 52.1
RcHm_v2.0_Chr7g0234231 Rosa chinensis HOM05D001366 ORTHO05D003220 1.6e-11 73.6 68 55.9
AT4G24450 Arabidopsis thaliana HOM05D001366 ORTHO05D003220 2.6e-11 72.8 71 53.5
Lj4A85G31 Lonicera japonica HOM05D001366 ORTHO05D003220 2.6e-11 72.8 73 50.7
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 3.5e-11 72.4 71 52.1
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 3.5e-11 72.4 71 52.1
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 3.5e-11 72.4 71 52.1
Thhalv10024230m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 3.5e-11 72.4 71 53.5
Lalb_Chr23g0269941 Lupinus albus HOM05D001366 ORTHO05D003220 5.9e-11 71.6 71 49.3
AL7G28770 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 7.7e-11 71.2 71 50.7
Aa31LG4G9550 Aethionema arabicum HOM05D001366 ORTHO05D003220 1.0e-10 70.9 68 54.4
BcaC09g50867 Brassica carinata HOM05D001366 ORTHO05D003220 5.0e-10 68.6 71 49.3
MCO07G158 Micromonas commoda HOM05D001366 ORTHO05D003220 5.0e-10 68.6 128 37.5
DCAR_029738 Daucus carota HOM05D001366 ORTHO05D003220 6.5e-10 68.2 73 46.6
Rhsim07G0213400 Rhododendron simsii HOM05D001366 ORTHO05D003220 1.1e-09 67.4 73 46.6
AagrBONN_evm.TU.Sc2ySwM_340.2093 Anthoceros agrestis HOM05D001366 ORTHO05D003220 3.2e-09 65.9 53 60.4
CBR_g12420 Chara braunii HOM05D001366 ORTHO05D003220 1.2e-06 57.4 90 40.0
Cre07.g332300 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D003220 7.5e-06 54.7 72 41.7


User provided reference genes

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