Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.6e-216 754.6 372 100.0
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.1e-193 679.9 374 89.3
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.2e-188 661.4 375 85.9
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 5.4e-188 661.0 375 85.6
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.1e-188 660.6 376 86.2
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 2.1e-187 659.1 372 86.3
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 2.1e-187 659.1 372 87.1
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 2.1e-187 659.1 372 87.1
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.7e-187 658.7 386 84.5
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.7e-187 658.7 371 87.1
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.7e-187 658.7 375 85.3
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 1.7e-186 656.0 372 86.0
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.0e-186 655.2 375 86.1
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.1e-186 654.4 372 86.6
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.1e-186 654.4 372 86.8
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 6.6e-186 654.1 367 86.6
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 8.7e-186 653.7 373 86.1
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 4.3e-185 651.4 372 87.1
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 5.6e-185 651.0 373 85.5
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 9.6e-185 650.2 375 85.1
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 9.6e-185 650.2 372 86.6
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.3e-184 649.8 369 86.7
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.6e-184 649.4 360 86.7
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.6e-184 649.4 372 86.8
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.8e-184 648.7 372 85.8
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 3.6e-184 648.3 372 85.5
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 6.2e-184 647.5 367 86.4
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 6.2e-184 647.5 373 85.3
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 1.4e-183 646.4 375 85.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 1.8e-183 646.0 372 85.2
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.4e-183 645.6 372 86.0
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.1e-183 645.2 372 85.8
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 9.0e-183 643.7 367 85.8
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 9.0e-183 643.7 367 85.8
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.2e-182 643.3 373 85.0
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.0e-182 642.5 373 84.5
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 2.6e-182 642.1 367 84.7
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 3.4e-182 641.7 372 85.5
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 9.9e-182 640.2 373 85.5
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 9.9e-182 640.2 387 82.4
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.7e-181 639.4 379 84.4
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 2.2e-181 639.0 373 82.6
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.9e-181 638.6 353 88.4
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 2.9e-181 638.6 372 84.4
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 4.9e-181 637.9 372 84.1
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 6.4e-181 637.5 367 85.0
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.9e-180 636.0 370 83.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.9e-180 636.0 399 79.9
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.4e-180 635.6 367 83.9
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 2.4e-180 635.6 367 84.5
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 4.2e-180 634.8 372 85.2
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.2e-180 634.8 372 85.2
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.2e-179 633.3 372 82.8
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 2.1e-179 632.5 372 84.4
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 3.5e-179 631.7 373 83.1
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 6.0e-179 630.9 366 85.2
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 6.0e-179 630.9 372 82.8
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 6.0e-179 630.9 372 84.9
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.0e-179 630.9 373 82.6
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 6.0e-179 630.9 367 83.7
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.7e-178 629.4 373 83.1
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.7e-178 629.4 373 83.1
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 3.0e-178 628.6 373 82.3
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 3.0e-178 628.6 371 82.2
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 6.6e-178 627.5 373 81.8
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.3e-177 625.2 372 82.8
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.3e-177 625.2 372 82.8
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.3e-177 625.2 372 82.8
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.3e-177 625.2 372 81.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 3.3e-177 625.2 372 83.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 4.3e-177 624.8 368 81.8
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.8e-176 622.1 367 83.4
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 3.6e-176 621.7 368 83.2
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 3.6e-176 621.7 368 81.5
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 4.8e-176 621.3 368 83.2
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.8e-176 621.3 373 83.4
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.4e-175 619.8 368 82.9
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.8e-175 619.4 372 81.7
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.8e-175 619.4 366 83.9
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 5.3e-175 617.8 364 83.2
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 9.0e-175 617.1 363 83.7
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.2e-174 616.7 367 79.6
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.5e-174 616.3 411 75.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.5e-174 616.3 371 82.5
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.4e-174 615.1 372 83.9
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 4.5e-174 614.8 364 81.6
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 7.6e-174 614.0 367 81.7
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.3e-173 613.2 364 81.9
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 3.8e-173 611.7 358 84.1
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.8e-173 611.7 364 82.4
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.1e-172 610.1 372 81.2
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.4e-172 609.8 359 83.6
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.9e-172 609.4 366 79.8
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 2.4e-172 609.0 362 80.7
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 4.2e-172 608.2 368 80.4
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 4.2e-172 608.2 372 79.8
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 5.5e-172 607.8 364 81.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.6e-171 606.3 369 81.8
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 2.7e-171 605.5 368 80.2
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 3.5e-171 605.1 362 80.1
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 3.5e-171 605.1 362 80.1
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 3.5e-171 605.1 362 80.1
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 3.5e-171 605.1 362 80.1
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 3.5e-171 605.1 362 80.1
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 6.0e-171 604.4 373 80.4
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 6.0e-171 604.4 434 71.7
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.0e-170 603.6 373 81.2
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.0e-170 603.6 372 80.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.0e-170 603.6 372 80.4
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.3e-170 603.2 399 76.4
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.3e-170 603.2 372 80.6
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 3.0e-170 602.1 368 79.6
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 6.7e-170 600.9 361 83.9
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.8e-168 595.5 347 83.9
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 3.7e-168 595.1 372 78.5
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 8.1e-168 594.0 370 77.6
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 1.1e-167 593.6 371 79.5
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.4e-167 592.4 374 80.5
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 4.0e-167 591.7 370 77.6
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.5e-164 582.4 368 77.4
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 5.5e-164 581.3 368 77.4
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.2e-163 580.1 373 76.9
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.2e-163 580.1 355 81.7
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.2e-163 580.1 372 78.0
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 7.9e-163 577.4 358 79.3
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.3e-162 576.6 362 79.0
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.1e-161 573.5 365 76.4
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 7.4e-161 570.9 365 77.8
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.1e-160 569.3 348 80.7
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.7e-160 568.5 368 76.1
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 2.4e-159 565.8 362 78.2
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 5.9e-158 561.2 353 79.0
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 5.9e-158 561.2 364 75.0
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 1.3e-157 560.1 374 76.2
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.2e-155 553.5 367 73.8
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.7e-155 552.4 362 74.6
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.2e-149 532.7 367 68.4
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 4.2e-148 528.5 367 68.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.1e-147 526.2 372 68.0
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 3.6e-147 525.4 369 68.6
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 6.7e-146 521.2 368 67.4
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 4.8e-144 515.0 394 68.8
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 4.1e-143 511.9 288 86.1
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 4.5e-142 508.4 358 69.0
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.9e-141 505.8 361 67.6
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 4.2e-140 501.9 369 66.1
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.2e-140 501.9 325 75.7
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 9.4e-140 500.7 377 68.4
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 7.9e-139 497.7 283 83.7
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.4e-135 486.9 276 85.1
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 7.0e-135 484.6 360 67.5
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.2e-133 479.6 367 64.0
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.9e-133 479.2 348 71.6
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 3.8e-133 478.8 279 83.5
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 2.7e-131 472.6 327 72.8
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.6e-131 472.2 283 83.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.4e-130 470.3 277 82.3
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.5e-129 466.8 282 81.9
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 4.5e-126 455.3 239 91.2
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 2.0e-121 439.9 384 57.3
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 4.8e-120 435.3 367 58.0
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 2.4e-119 433.0 275 79.3
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 6.8e-114 414.8 374 55.6
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 6.8e-114 414.8 405 53.1
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.2e-113 414.1 273 74.0
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.3e-109 400.6 285 69.1
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.2e-96 356.7 273 68.5
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.0e-93 346.3 197 83.8
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 5.6e-92 342.0 222 76.1
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.4e-87 325.5 195 81.5
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.0e-85 319.7 177 85.9
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 3.6e-67 259.6 168 78.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 4.3e-60 236.1 266 53.8
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.5e-47 193.7 361 32.4
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 8.7e-45 185.3 120 73.3
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.1e-44 184.9 113 82.3
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 4.3e-44 183.0 148 64.9
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 2.2e-43 180.6 120 71.7
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.7e-43 179.9 441 28.1
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.5e-41 174.5 406 27.3
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.1e-36 158.3 115 67.0
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 2.2e-32 144.1 306 30.4
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 3.2e-23 113.6 81 67.9
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 1.6e-09 68.2 49 73.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 4.2e-07 60.1 189 29.6


User provided reference genes

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