Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-200 703.0 360 100.0
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-197 693.0 360 98.6
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.1e-180 635.2 365 89.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.5e-171 606.3 354 85.3
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 5.8e-171 604.4 359 86.1
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 5.8e-171 604.4 352 86.1
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 7.6e-171 604.0 347 87.3
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.3e-170 603.2 347 88.2
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.1e-169 600.1 335 89.9
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.4e-169 599.7 343 86.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.9e-169 599.4 353 84.7
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.6e-168 596.3 345 86.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.0e-167 593.6 362 84.3
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.3e-167 593.2 344 85.5
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.3e-167 592.4 351 85.5
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.9e-167 591.7 399 77.9
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 5.1e-167 591.3 353 85.8
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 6.7e-167 590.9 356 84.3
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.1e-166 590.1 349 84.8
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.5e-166 589.7 350 86.0
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.9e-166 589.3 346 85.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.4e-166 587.4 353 84.4
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.3e-165 586.6 351 83.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.6e-165 586.3 330 86.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.6e-165 586.3 348 84.8
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.6e-165 586.3 336 85.4
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.7e-165 585.1 337 86.6
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.8e-165 584.7 339 86.4
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 4.8e-165 584.7 348 84.2
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.1e-164 583.6 341 85.6
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.4e-164 583.2 341 86.2
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.4e-164 582.4 341 85.6
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.4e-164 582.4 354 83.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 4.0e-164 581.6 342 85.1
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.0e-164 581.6 352 83.5
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.3e-164 581.3 341 84.5
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 6.9e-164 580.9 342 84.5
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-163 580.1 333 85.9
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-163 579.7 346 84.4
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.5e-163 579.7 352 82.7
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.0e-163 579.3 330 87.3
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.0e-163 579.3 344 84.3
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 2.0e-163 579.3 360 82.8
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.0e-163 579.3 352 83.2
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.6e-163 578.9 342 84.2
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.6e-163 578.9 342 84.2
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.6e-163 578.9 342 84.2
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 4.5e-163 578.2 351 84.0
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.8e-163 577.8 342 83.9
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.0e-162 577.0 346 83.2
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.7e-162 576.2 341 84.8
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.2e-162 575.9 357 80.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.2e-162 575.9 355 82.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 4.9e-162 574.7 346 83.5
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 4.9e-162 574.7 346 83.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 6.5e-162 574.3 337 84.6
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 6.5e-162 574.3 333 86.5
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-161 573.5 346 83.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.4e-161 573.2 332 85.8
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-161 572.8 332 84.9
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.9e-161 572.8 346 82.7
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.5e-161 572.4 349 81.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.2e-161 572.0 349 81.9
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 7.1e-161 570.9 346 83.8
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.1e-161 570.9 346 82.7
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.6e-160 569.7 345 83.5
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 4.6e-160 568.2 327 84.7
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.9e-160 567.4 330 85.5
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.8e-159 566.2 329 85.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 6.7e-159 564.3 347 81.8
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.5e-158 563.1 349 82.5
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-158 562.8 349 82.5
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.9e-158 562.8 330 84.5
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-158 562.4 337 84.0
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-157 560.1 337 83.7
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.3e-157 560.1 347 81.0
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-157 560.1 349 82.2
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-157 560.1 349 82.2
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.8e-157 558.9 362 80.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.1e-156 555.4 354 81.1
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-155 553.5 349 81.1
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.5e-155 553.1 354 81.6
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-155 552.0 366 78.4
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.5e-155 551.6 334 82.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 7.7e-155 550.8 375 74.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 6.5e-154 547.7 349 80.2
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 8.5e-154 547.4 340 81.8
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-153 547.0 353 79.9
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.4e-153 546.6 345 80.9
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 5.5e-153 544.7 336 81.0
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 7.2e-153 544.3 357 77.6
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-152 543.5 333 81.4
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.2e-152 543.5 344 80.5
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.2e-152 543.5 349 78.2
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.1e-152 542.7 331 81.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 7.9e-152 540.8 370 75.9
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.3e-151 539.3 325 81.2
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.1e-151 538.1 328 82.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.7e-151 537.7 334 79.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.2e-149 532.7 301 87.0
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 2.2e-149 532.7 345 78.6
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-148 530.0 374 74.6
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.4e-148 530.0 297 89.9
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.0e-147 526.2 416 69.0
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.5e-146 520.8 411 68.4
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.8e-143 513.1 349 76.2
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.5e-142 510.0 333 77.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.8e-141 505.0 332 72.9
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.4e-140 503.4 342 74.9
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.2e-138 496.1 359 71.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 9.4e-137 490.7 345 73.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 3.6e-136 488.8 288 84.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.0e-136 487.6 351 74.1
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.6e-131 472.6 272 88.6
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 2.5e-129 466.1 336 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.4e-129 464.2 350 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.1e-128 463.0 347 67.4
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 4.0e-127 458.8 344 67.2
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 8.8e-127 457.6 344 66.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 5.7e-126 454.9 360 67.5
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 9.8e-126 454.1 308 74.0
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-124 449.5 381 64.3
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 4.1e-124 448.7 297 79.1
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.9e-123 444.9 264 84.1
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 3.6e-120 435.6 317 67.5
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.7e-117 426.8 345 66.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 3.7e-117 425.6 332 62.7
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 4.1e-116 422.2 308 65.9
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 4.5e-115 418.7 340 66.5
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 6.6e-114 414.8 248 84.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-110 402.5 369 59.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-109 400.6 241 83.8
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 6.3e-109 398.3 240 84.6
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.4e-108 397.1 241 83.4
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.8e-108 396.7 308 64.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.0e-106 391.0 274 69.0
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-104 383.6 273 72.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.6e-104 382.5 358 60.1
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.8e-102 374.4 244 75.4
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.1e-100 369.0 246 77.2
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.6e-99 367.1 236 77.5
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.9e-97 360.1 320 57.2
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.6e-88 329.3 197 84.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.3e-76 288.1 285 58.9
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.7e-74 283.9 203 75.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.8e-63 247.3 283 48.8
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.5e-62 242.7 161 72.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-60 238.0 152 75.7
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.7e-59 233.4 129 89.9
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.1e-57 228.0 357 44.8
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.1e-55 219.9 136 80.9
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.0e-54 217.2 267 51.7
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 3.9e-50 203.0 133 75.2
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.4e-47 193.7 236 42.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.3e-40 171.4 263 41.4
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.1e-39 168.3 103 79.6
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-37 161.8 97 81.4
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.2e-37 160.6 102 73.5
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.0e-34 151.8 88 79.5
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.4e-34 151.4 96 75.0
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.3e-33 146.7 96 79.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 6.3e-32 142.5 110 71.8
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 7.7e-30 135.6 76 85.5
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.0e-29 132.9 190 50.0
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-28 131.0 82 74.4
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.7e-24 117.9 72 79.2
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.7e-22 109.0 73 65.8
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.0e-21 108.6 96 60.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-20 105.1 73 69.9
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.1e-20 105.1 78 64.1
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 6.1e-19 99.4 72 75.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 5.2e-18 96.3 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.4e-15 87.4 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 2.8e-08 63.9 50 66.0


User provided reference genes

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