Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027316 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 2.9e-45 185.3 125 100.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 5.6e-12 74.7 120 43.3
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 7.3e-12 74.3 125 44.0
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 9.5e-12 73.9 124 50.8
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 1.1e-10 70.5 125 40.8
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 4.0e-10 68.6 120 56.7
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.2e-09 67.0 118 40.7
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 2.6e-09 65.9 118 42.4
Ah.15g098480 Amaranthus hybridus HOM05D001415 ORTHO05D001075 3.4e-09 65.5 133 39.1
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 5.8e-09 64.7 133 37.6
Ah.08g219870 Amaranthus hybridus HOM05D001415 ORTHO05D001075 7.5e-09 64.3 125 40.8
MSTRG.21203 Avicennia marina HOM05D001415 ORTHO05D001075 1.3e-08 63.5 140 40.7
SalBow3G1548 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.3e-08 63.5 44 65.9
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.7e-08 63.2 124 53.2
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.7e-08 63.2 124 53.2
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.7e-08 63.2 124 53.2
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 2.2e-08 62.8 44 68.2
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.9e-08 62.4 118 53.4
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.9e-08 62.4 118 53.4
Cc01_g13180 Coffea canephora HOM05D001415 ORTHO05D001075 3.7e-08 62.0 39 74.4
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.4e-08 61.2 49 61.2
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.4e-08 61.2 49 61.2
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.4e-08 61.2 49 61.2
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 1.1e-07 60.5 118 44.1
CAN.G141.1 Capsicum annuum HOM05D018369 ORTHO05D001075 1.4e-07 60.1 127 48.8
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 1.9e-07 59.7 49 61.2
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 1.9e-07 59.7 45 60.0
Solyc06g005610.1 Solanum lycopersicum HOM05D018369 ORTHO05D001075 5.4e-07 58.2 127 47.2
PGSC0003DMG400002141 Solanum tuberosum HOM05D018369 ORTHO05D001075 5.4e-07 58.2 127 47.2
DCAR_005958 Daucus carota HOM05D001415 ORTHO05D001075 7.1e-07 57.8 127 37.0
Sc21g0005940 Simmondsia chinensis HOM05D001415 ORTHO05D001075 7.1e-07 57.8 37 73.0
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 7.1e-07 57.8 125 44.0
CAN.G394.70 Capsicum annuum HOM05D018369 ORTHO05D001075 9.2e-07 57.4 125 40.8
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 9.2e-07 57.4 124 42.7
Sc12g0001300 Simmondsia chinensis HOM05D001415 ORTHO05D001075 1.2e-06 57.0 41 65.9
unitig_746.g26724 Utricularia gibba HOM05D001415 ORTHO05D001075 1.6e-06 56.6 144 30.6
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.1e-06 56.2 44 54.5
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.7e-06 55.8 44 54.5
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 2.7e-06 55.8 42 57.1
unitig_899.g15255 Utricularia gibba HOM05D001415 ORTHO05D001075 2.7e-06 55.8 39 61.5
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 3.5e-06 55.5 49 55.1
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.5e-06 55.5 48 56.2
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 3.5e-06 55.5 119 38.7
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 3.5e-06 55.5 41 61.0
Migut.B01170 Erythranthe guttata HOM05D001415 ORTHO05D001075 4.6e-06 55.1 137 37.2
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 4.6e-06 55.1 49 55.1
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 4.6e-06 55.1 42 57.1
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 4.6e-06 55.1 49 57.1
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 6.0e-06 54.7 36 69.4
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 6.0e-06 54.7 41 53.7
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 6.0e-06 54.7 49 53.1
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.0e-06 54.7 118 52.5
Sopen06g001570 Solanum pennellii HOM05D018369 ORTHO05D001075 6.0e-06 54.7 120 47.5
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 7.8e-06 54.3 119 47.9
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 7.8e-06 54.3 38 55.3
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 7.8e-06 54.3 121 40.5
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 7.8e-06 54.3 121 40.5
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 7.8e-06 54.3 40 55.0
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 7.8e-06 54.3 39 64.1
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 7.8e-06 54.3 50 60.0
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 7.8e-06 54.3 39 64.1
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 7.8e-06 54.3 39 64.1
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 7.8e-06 54.3 43 55.8
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 7.8e-06 54.3 40 60.0


User provided reference genes

Program Settings