Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026956 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 9.9e-46 186.4 94 100.0
CSS0045372 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 4.9e-45 184.1 94 98.9
CSS0016023 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 4.2e-44 181.0 94 96.8
CSS0013633 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 6.0e-43 177.2 94 95.7
CSS0002739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 2.2e-37 158.7 91 91.2
CSS0021013 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 6.0e-35 150.6 94 84.0
CSS0025057 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 8.7e-34 146.7 94 85.1
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 5.1e-18 94.4 66 80.3
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 5.1e-18 94.4 66 80.3
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 2.8e-16 88.6 66 72.7
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 4.8e-16 87.8 66 71.2
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 4.8e-16 87.8 66 72.7
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 6.3e-16 87.4 66 71.2
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 1.4e-15 86.3 66 68.2
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 1.8e-15 85.9 66 68.2
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 6.9e-15 84.0 66 65.2
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 2.0e-14 82.4 66 65.2
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 2.0e-14 82.4 66 66.7
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 2.6e-14 82.0 66 65.2
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 2.6e-14 82.0 66 65.2
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 2.6e-14 82.0 66 65.2
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 2.6e-14 82.0 66 65.2
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 3.4e-14 81.6 65 64.6
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 7.7e-14 80.5 66 66.7
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 1.0e-13 80.1 64 64.1
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 1.0e-13 80.1 65 66.2
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.0e-13 80.1 65 67.7
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 1.3e-13 79.7 66 62.1
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.3e-13 79.7 66 66.7
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 1.7e-13 79.3 64 64.1
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 2.2e-13 79.0 66 62.1
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 2.9e-13 78.6 63 65.1
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 3.8e-13 78.2 64 62.5
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 3.8e-13 78.2 66 59.1
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 3.8e-13 78.2 66 63.6
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 5.0e-13 77.8 66 60.6
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 5.0e-13 77.8 64 64.1
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 6.5e-13 77.4 66 68.2
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 8.5e-13 77.0 64 62.5
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 8.5e-13 77.0 66 60.6
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 8.5e-13 77.0 66 65.2
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 8.5e-13 77.0 63 65.1
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 1.1e-12 76.6 66 60.6
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 1.4e-12 76.3 66 65.2
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 1.4e-12 76.3 66 62.1
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 1.4e-12 76.3 63 65.1
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 1.4e-12 76.3 63 65.1
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 1.4e-12 76.3 66 62.1
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 1.9e-12 75.9 64 62.5
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.9e-12 75.9 66 66.7
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 1.9e-12 75.9 66 65.2
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.9e-12 75.9 66 65.2
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.9e-12 75.9 66 60.6
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.9e-12 75.9 66 60.6
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 1.9e-12 75.9 64 60.9
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 2.5e-12 75.5 63 63.5
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 2.5e-12 75.5 66 60.6
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 2.5e-12 75.5 66 63.6
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 2.5e-12 75.5 63 63.5
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 4.2e-12 74.7 64 60.9
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 4.2e-12 74.7 64 60.9
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 4.2e-12 74.7 64 60.9
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.2e-12 74.7 63 63.5
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.2e-12 74.7 63 63.5
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 4.2e-12 74.7 66 59.1
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 5.5e-12 74.3 66 63.6
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 5.5e-12 74.3 66 56.1
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 7.2e-12 73.9 65 60.0
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 7.2e-12 73.9 63 61.9
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 7.2e-12 73.9 66 63.6
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 7.2e-12 73.9 66 59.1
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 7.2e-12 73.9 63 60.3
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 7.2e-12 73.9 59 62.7
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 9.4e-12 73.6 66 60.6
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 9.4e-12 73.6 66 59.1
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 9.4e-12 73.6 63 63.5
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 9.4e-12 73.6 64 60.9
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 1.2e-11 73.2 64 64.1
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 1.2e-11 73.2 66 62.1
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 1.6e-11 72.8 63 66.7
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 2.1e-11 72.4 68 57.4
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 2.1e-11 72.4 65 55.4
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 2.1e-11 72.4 66 60.6
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 3.6e-11 71.6 65 61.5
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 4.6e-11 71.2 66 56.1
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 4.6e-11 71.2 64 60.9
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 6.1e-11 70.9 54 61.1
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 1.0e-10 70.1 63 60.3
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 1.0e-10 70.1 54 64.8
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 1.4e-10 69.7 67 56.7
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 1.4e-10 69.7 66 57.6
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 1.8e-10 69.3 54 64.8
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 3.0e-10 68.6 64 59.4
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 3.0e-10 68.6 66 59.1
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 3.0e-10 68.6 63 57.1
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 3.9e-10 68.2 66 50.0
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 5.1e-10 67.8 66 59.1
Aa31LG5G19870 Aethionema arabicum HOM05D004428 ORTHO05D017237 6.7e-10 67.4 64 54.7
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 8.8e-10 67.0 66 56.1
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 1.1e-09 66.6 66 57.6
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.5e-09 66.2 94 45.7
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 2.5e-09 65.5 51 64.7
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 3.3e-09 65.1 65 55.4
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 4.3e-09 64.7 94 44.7
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 5.7e-09 64.3 66 54.5
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 5.7e-09 64.3 66 53.0
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 7.4e-09 63.9 49 65.3
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 1.7e-08 62.8 51 60.8
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 2.2e-08 62.4 64 57.8
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 2.2e-08 62.4 66 53.0
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 2.8e-08 62.0 86 45.3
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 3.7e-08 61.6 66 51.5
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 1.8e-07 59.3 64 56.2
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 1.8e-07 59.3 64 56.2
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 5.3e-07 57.8 49 63.3
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 9.1e-07 57.0 64 50.0
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 2.0e-06 55.8 64 54.7


User provided reference genes

Program Settings