Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.2e-98 361.3 174 100.0
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.1e-95 353.2 184 94.6
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 2.7e-33 146.0 149 58.4
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.4e-32 143.7 149 57.0
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.4e-32 143.7 149 57.0
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.3e-32 142.9 137 59.9
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 3.0e-32 142.5 137 60.6
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 6.8e-32 141.4 149 55.7
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 8.8e-32 141.0 149 56.4
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 4.4e-31 138.7 149 55.7
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 7.5e-31 137.9 137 59.1
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 9.8e-31 137.5 137 58.4
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 9.8e-31 137.5 149 55.0
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.7e-30 136.7 149 55.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.7e-30 136.7 149 55.0
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.7e-30 136.7 149 55.0
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 2.2e-30 136.3 149 55.0
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 2.2e-30 136.3 149 55.0
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 2.8e-30 136.0 149 54.4
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 4.8e-30 135.2 149 55.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 4.8e-30 135.2 149 54.4
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 4.8e-30 135.2 136 58.1
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 8.3e-30 134.4 136 58.1
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 8.3e-30 134.4 146 54.8
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.1e-29 134.0 137 56.9
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.4e-29 133.7 149 54.4
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.1e-29 132.5 138 56.5
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 5.4e-29 131.7 144 54.2
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.2e-28 130.6 149 53.0
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.6e-28 130.2 137 56.2
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.6e-28 130.2 140 55.0
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.6e-28 130.2 137 56.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.0e-28 129.8 149 53.7
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.0e-28 129.8 142 55.6
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.0e-28 129.8 137 56.2
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 2.7e-28 129.4 149 52.3
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 2.7e-28 129.4 145 53.1
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 3.5e-28 129.0 137 55.5
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 4.5e-28 128.6 142 54.9
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 4.5e-28 128.6 149 52.3
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 7.7e-28 127.9 145 52.4
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 7.7e-28 127.9 142 54.9
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.0e-27 127.5 137 54.0
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.3e-27 127.1 140 54.3
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.3e-27 127.1 140 54.3
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.3e-27 127.1 149 52.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.3e-27 127.1 140 52.1
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 2.3e-27 126.3 137 54.7
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 2.3e-27 126.3 142 54.2
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.3e-27 126.3 140 52.9
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.9e-27 125.9 142 52.8
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.9e-27 125.9 138 55.1
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.9e-27 125.9 138 55.1
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 3.8e-27 125.6 137 54.7
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 5.0e-27 125.2 130 56.2
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 6.5e-27 124.8 130 55.4
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 8.6e-27 124.4 130 53.8
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.1e-26 124.0 137 54.0
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.1e-26 124.0 142 51.4
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.5e-26 123.6 142 51.4
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.9e-26 123.2 144 50.7
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.9e-26 123.2 142 52.8
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.5e-26 122.9 143 51.0
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.5e-26 122.9 130 54.6
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 3.3e-26 122.5 129 55.0
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.3e-26 122.5 149 51.0
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 4.2e-26 122.1 138 51.4
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 4.2e-26 122.1 138 51.4
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 4.2e-26 122.1 138 51.4
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 5.5e-26 121.7 149 51.0
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 5.5e-26 121.7 130 54.6
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 7.2e-26 121.3 130 53.1
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.6e-25 120.2 138 50.7
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.6e-25 120.2 138 50.7
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.1e-25 119.8 138 53.6
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 2.1e-25 119.8 149 50.3
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 3.6e-25 119.0 140 52.1
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.6e-25 119.0 136 52.2
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 4.7e-25 118.6 149 48.3
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.4e-24 117.1 137 49.6
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 3.0e-24 115.9 145 49.0
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 6.8e-24 114.8 142 52.1
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 6.8e-24 114.8 136 49.3
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 2.6e-23 112.8 149 47.7
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.2e-22 109.8 127 51.2
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.2e-22 109.8 127 51.2
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 6.3e-22 108.2 142 45.1
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.1e-21 107.5 142 46.5
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.4e-21 107.1 129 48.8
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.3e-19 100.5 119 52.1
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.1e-18 97.4 117 50.4
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.7e-17 92.0 61 75.4
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 6.1e-17 91.7 129 43.4
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 4.0e-16 89.0 66 71.2
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 5.8e-15 85.1 113 46.0
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.9e-14 82.8 64 68.8
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 9.2e-13 77.8 128 38.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.0e-11 74.3 127 34.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.0e-11 74.3 127 37.0
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-11 73.9 111 43.2
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 1.7e-11 73.6 127 33.9
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.3e-11 73.2 149 37.6
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.3e-11 73.2 127 36.2
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.6e-11 71.2 46 78.3
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.9e-10 70.1 49 73.5
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 2.6e-07 59.7 127 31.5
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.3e-06 57.4 60 53.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 4.9e-06 55.5 48 62.5
Duzib268G0722 Durio zibethinus HOM05D006539 ORTHO05D186223 8.3e-06 54.7 34 79.4


User provided reference genes

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