Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026820 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.4e-53 210.7 104 100.0
CSS0027181 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.4e-48 195.3 104 92.3
CSS0020529 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.2e-14 82.4 64 65.6
vmacro12180 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.1e-13 80.1 65 64.6
Rhsim06G0165700 Rhododendron simsii HOM05D000399 ORTHO05D000304 2.1e-12 75.9 64 60.9
Ciclev10016164m.g Citrus clementina HOM05D000399 ORTHO05D000304 7.9e-12 73.9 64 59.4
Sopen07g025140 Solanum pennellii HOM05D000399 ORTHO05D000304 7.9e-12 73.9 54 64.8
PGSC0003DMG400000675 Solanum tuberosum HOM05D000399 ORTHO05D000304 1.4e-11 73.2 54 63.0
CSS0017112 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.8e-11 72.8 64 56.2
CSS0030062 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.8e-11 72.8 64 56.2
Solyc07g049160.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.8e-11 72.8 54 63.0
Hma1.2p1_0842F.1_g227050 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.3e-11 72.4 64 60.9
Migut.H01231 Erythranthe guttata HOM05D000399 ORTHO05D000304 5.1e-11 71.2 71 53.5
SGA_v2.0_scaffold159G37572 Striga asiatica HOM05D000399 ORTHO05D000304 5.1e-11 71.2 66 57.6
CAN.G834.2 Capsicum annuum HOM05D000399 ORTHO05D000304 6.7e-11 70.9 54 61.1
Dinv08739 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-10 70.1 47 72.3
Cc05_g03400 Coffea canephora HOM05D000399 ORTHO05D000304 1.5e-10 69.7 54 61.1
Hma1.2p1_0842F.1_g227040 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 1.5e-10 69.7 50 68.0
Lsat_1_v5_gn_7_92641 Lactuca sativa HOM05D000399 ORTHO05D000304 1.5e-10 69.7 58 60.3
Nitab4.5_0005321g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.0e-10 69.3 54 59.3
Atru.chr6.3232 Acer truncatum HOM05D000399 ORTHO05D000304 2.5e-10 68.9 64 56.2
Eucgr.K00771 Eucalyptus grandis HOM05D000399 ORTHO05D000304 2.5e-10 68.9 64 57.8
Lj8A128T49 Lonicera japonica HOM05D000399 ORTHO05D000304 3.3e-10 68.6 50 68.0
Potri.002G226700 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.3e-10 68.6 64 53.1
Duzib133G0461 Durio zibethinus HOM05D000399 ORTHO05D000304 5.7e-10 67.8 54 57.4
Oeu007118.1 Olea europaea HOM05D000291 ORTHO05D008053 5.7e-10 67.8 54 55.6
COL.COLO4_21840 Corchorus olitorius HOM05D000399 ORTHO05D000304 7.4e-10 67.4 64 50.0
PGSC0003DMG400020752 Solanum tuberosum HOM05D000399 ORTHO05D000304 9.7e-10 67.0 50 64.0
Sabra02G0173300 Salix brachista HOM05D000399 ORTHO05D000304 1.3e-09 66.6 64 51.6
Gorai.001G215700 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.7e-09 66.2 64 50.0
HanXRQChr12g0373841 Helianthus annuus HOM05D000399 ORTHO05D000304 1.7e-09 66.2 66 54.5
Nitab4.5_0000482g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.7e-09 66.2 54 61.1
Peaxi162Scf00921g00025 Petunia axillaris HOM05D000399 ORTHO05D000304 1.7e-09 66.2 54 57.4
ECA236G2908 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.2e-09 65.9 54 59.3
HanXRQChr04g0126951 Helianthus annuus HOM05D000399 ORTHO05D000304 2.2e-09 65.9 54 61.1
MSTRG.14144 Avicennia marina HOM05D000399 ORTHO05D000304 2.8e-09 65.5 47 61.7
Gohir.A11G154100 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.8e-09 65.5 64 48.4
Lj8A128T48 Lonicera japonica HOM05D000399 ORTHO05D000304 2.8e-09 65.5 64 53.1
Solyc05g041920.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.8e-09 65.5 50 62.0
CiPaw.11G011600 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.7e-09 65.1 67 53.7
Cc05_g03410 Coffea canephora HOM05D000399 ORTHO05D000304 3.7e-09 65.1 54 59.3
Dinv08740 Davidia involucrata HOM05D000399 ORTHO05D000304 3.7e-09 65.1 63 52.4
Peaxi162Scf00147g01712 Petunia axillaris HOM05D000399 ORTHO05D000304 3.7e-09 65.1 64 54.7
Sc21g0001200 Simmondsia chinensis HOM05D000399 ORTHO05D000304 3.7e-09 65.1 64 53.1
Actinidia09734 Actinidia chinensis HOM05D000399 ORTHO05D000304 4.8e-09 64.7 47 70.2
SalBow1G0456 Salvia bowleyana HOM05D000399 ORTHO05D000304 4.8e-09 64.7 66 53.0
Sopen05g025990 Solanum pennellii HOM05D000399 ORTHO05D000304 4.8e-09 64.7 60 56.7
MSTRG.12282 Avicennia marina HOM05D000399 ORTHO05D000304 6.3e-09 64.3 56 55.4
CSS0041264 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 6.3e-09 64.3 50 62.0
Gohir.A07G186300 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.3e-09 64.3 64 48.4
Manes.13G068400 Manihot esculenta HOM05D000399 ORTHO05D000304 6.3e-09 64.3 64 50.0
CAN.G834.3 Capsicum annuum HOM05D000399 ORTHO05D000304 8.2e-09 63.9 63 52.4
Oeu021493.1 Olea europaea HOM05D000399 ORTHO05D000304 8.2e-09 63.9 54 61.1
Peaxi162Scf00921g00026 Petunia axillaris HOM05D000399 ORTHO05D000304 8.2e-09 63.9 52 59.6
QL08p031336 Quercus lobata HOM05D000399 ORTHO05D000304 8.2e-09 63.9 64 51.6
Rhsim06G0165800 Rhododendron simsii HOM05D000399 ORTHO05D000304 8.2e-09 63.9 65 50.8
Gohir.D07G192800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.1e-08 63.5 64 48.4
Nitab4.5_0009416g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.1e-08 63.5 50 62.0
SalBow1G2750 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.1e-08 63.5 47 61.7
GSVIVG01030481001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.1e-08 63.5 52 51.9
TAR624G0809 Trochodendron aralioides HOM05D006348 ORTHO05D008261 1.8e-08 62.8 64 46.9
Duzib138G0147 Durio zibethinus HOM05D000399 ORTHO05D000304 3.1e-08 62.0 64 48.4
RcHm_v2.0_Chr2g0158531 Rosa chinensis HOM05D000399 ORTHO05D000304 3.1e-08 62.0 64 53.1
Cfa014335 Carpinus fangiana HOM05D000225 ORTHO05D001595 4.1e-08 61.6 64 50.0
DCAR_012935 Daucus carota HOM05D000399 ORTHO05D000304 4.1e-08 61.6 51 60.8
Nn1g03433 Nelumbo nucifera HOM05D000399 ORTHO05D000304 4.1e-08 61.6 64 48.4
Lsat_1_v5_gn_5_123501 Lactuca sativa HOM05D000399 ORTHO05D000304 5.3e-08 61.2 64 51.6
Medtr3g079980 Medicago truncatula HOM05D000399 ORTHO05D000304 5.3e-08 61.2 64 50.0
Nitab4.5_0000482g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.3e-08 61.2 45 66.7
Sed0024897 Sechium edule HOM05D000399 ORTHO05D000304 5.3e-08 61.2 42 64.3
ClCG02G002110 Citrullus lanatus HOM05D000399 ORTHO05D000304 6.9e-08 60.8 42 66.7
MD09G1111700 Malus domestica HOM05D000399 ORTHO05D000304 6.9e-08 60.8 64 53.1
MD17G1102000 Malus domestica HOM05D000399 ORTHO05D000304 6.9e-08 60.8 64 51.6
Medtr3g079860 Medicago truncatula HOM05D000399 ORTHO05D000304 6.9e-08 60.8 56 53.6
Medtr6g071535 Medicago truncatula HOM05D000399 ORTHO05D000304 6.9e-08 60.8 64 50.0
Oeu057780.1 Olea europaea HOM05D000399 ORTHO05D000304 6.9e-08 60.8 54 59.3
RcHm_v2.0_Chr7g0189841 Rosa chinensis HOM05D000399 ORTHO05D000304 6.9e-08 60.8 64 50.0
Migut.M01455 Erythranthe guttata HOM05D000399 ORTHO05D000304 9.1e-08 60.5 64 46.9
TPR.G27598 Trifolium pratense HOM05D000399 ORTHO05D000304 1.2e-07 60.1 54 53.7
Cpa.g.sc87.111 Carica papaya HOM05D000399 ORTHO05D000304 1.5e-07 59.7 64 53.1
HanXRQChr16g0506621 Helianthus annuus HOM05D000399 ORTHO05D000304 1.5e-07 59.7 54 48.1
Haze_12793 Corylus avellana HOM05D000399 ORTHO05D000304 2.0e-07 59.3 64 48.4
Migut.H01232 Erythranthe guttata HOM05D000399 ORTHO05D000304 2.0e-07 59.3 54 50.0
HanXRQChr16g0506601 Helianthus annuus HOM05D000399 ORTHO05D000304 2.0e-07 59.3 54 50.0
TPR.G35849 Trifolium pratense HOM05D000399 ORTHO05D000304 2.0e-07 59.3 42 64.3
Nitab4.5_0000482g0060 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-07 58.9 45 64.4
Psat5g112200 Pisum sativum HOM05D000399 ORTHO05D000304 2.6e-07 58.9 54 51.9
CDE02G1170 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 3.4e-07 58.5 48 50.0
Lsat_1_v5_gn_7_92980 Lactuca sativa HOM05D000399 ORTHO05D000304 4.5e-07 58.2 54 50.0
Medtr3g080010 Medicago truncatula HOM05D000399 ORTHO05D000304 4.5e-07 58.2 54 53.7
FvH4_6g42650 Fragaria vesca HOM05D000399 ORTHO05D000304 5.9e-07 57.8 64 51.6
FAN09G3465 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.9e-07 57.8 64 50.0
Gorai.007G171400 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.9e-07 57.8 64 45.3
ECA234G3970 Erigeron canadensis HOM05D000399 ORTHO05D000304 7.7e-07 57.4 47 59.6
PSO541G5711 Papaver somniferum HOM05D000399 ORTHO05D000304 7.7e-07 57.4 50 48.0
PSO675G4047 Papaver somniferum HOM05D000399 ORTHO05D000304 7.7e-07 57.4 50 48.0
Prupe.3G213200 Prunus persica HOM05D000399 ORTHO05D000304 7.7e-07 57.4 63 49.2
CANSAT64G0834 Cannabis sativa HOM05D000399 ORTHO05D000304 1.0e-06 57.0 54 50.0
ECA236G0530 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.0e-06 57.0 54 48.1
CsaV3_7G003390 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.3e-06 56.6 54 55.6
FAN14G3121 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.3e-06 56.6 64 51.6
Medtr3g080000 Medicago truncatula HOM05D000399 ORTHO05D000304 1.7e-06 56.2 54 50.0
Solyc07g049150.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.7e-06 56.2 68 48.5
TWI18G0932 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 1.7e-06 56.2 63 46.0
FAN13G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.2e-06 55.8 65 44.6
Thecc.01G178900 Theobroma cacao HOM05D000399 ORTHO05D000304 2.2e-06 55.8 54 48.1
FAN08G0997 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.9e-06 55.5 65 43.1
FvH4_5g08550 Fragaria vesca HOM05D000399 ORTHO05D000304 3.8e-06 55.1 65 44.6
FAN18G3343 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.8e-06 55.1 65 44.6
THA.LOC104820426 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.8e-06 55.1 54 50.0
AT4G15417 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 5.0e-06 54.7 58 50.0
PGSC0003DMG400000676 Solanum tuberosum HOM05D000399 ORTHO05D000304 5.0e-06 54.7 64 48.4
Lalb_Chr18g0045451 Lupinus albus HOM05D000399 ORTHO05D000304 6.5e-06 54.3 54 51.9
THA.LOC104810429 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 6.5e-06 54.3 54 55.6
Zm00001eb042770 Zea mays HOM05D000399 ORTHO05D000304 6.5e-06 54.3 51 49.0
PGSC0003DMG400014598 Solanum tuberosum HOM05D000138 ORTHO05D000304 8.5e-06 53.9 54 51.9


User provided reference genes

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