Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1588.2 816 100.0
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1327.8 822 84.5
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 0.0e+00 1312.4 837 82.3
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 0.0e+00 1292.3 824 82.3
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 0.0e+00 1233.0 819 78.5
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1185.6 781 76.8
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 0.0e+00 1167.5 820 73.5
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 0.0e+00 1165.2 800 74.6
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 0.0e+00 1161.0 822 72.3
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 0.0e+00 1139.0 822 70.3
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 0.0e+00 1134.8 818 71.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 0.0e+00 1130.9 818 71.5
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 0.0e+00 1129.8 792 73.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 0.0e+00 1128.6 854 71.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 0.0e+00 1125.5 818 71.1
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 0.0e+00 1124.0 825 69.5
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 0.0e+00 1123.6 822 70.4
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 0.0e+00 1118.2 820 70.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 0.0e+00 1111.3 826 69.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 0.0e+00 1107.8 820 69.8
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 0.0e+00 1100.5 818 69.9
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 0.0e+00 1098.6 817 69.8
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1097.4 821 70.4
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 0.0e+00 1096.3 806 68.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 0.0e+00 1095.9 795 70.1
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 0.0e+00 1095.5 796 70.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 0.0e+00 1082.4 807 69.5
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 0.0e+00 1081.2 807 68.9
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1080.5 821 69.7
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 0.0e+00 1079.7 807 69.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 0.0e+00 1077.4 811 68.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 0.0e+00 1075.5 821 68.2
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.1e-311 1073.2 823 67.3
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.1e-311 1072.8 817 68.1
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 2.2e-311 1072.0 807 68.5
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 5.0e-311 1070.8 817 68.7
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.9e-310 1068.9 817 68.8
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 7.2e-310 1067.0 821 67.8
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.0e-309 1063.5 817 68.8
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 1.4e-308 1062.8 820 67.0
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-307 1059.7 817 68.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 4.4e-307 1057.7 798 69.3
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.7e-307 1057.4 866 65.4
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 7.5e-307 1057.0 820 66.3
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.8e-306 1055.0 807 66.7
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 3.7e-306 1054.7 798 67.3
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.1e-305 1053.1 816 67.6
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.1e-305 1053.1 807 67.5
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 5.0e-303 1044.3 819 65.7
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 6.1e-301 1037.3 809 68.2
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.4e-300 1036.2 824 65.2
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 5.2e-300 1034.2 808 66.7
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.2e-299 1033.1 799 67.6
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.4e-299 1031.2 825 64.2
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 8.3e-298 1026.9 820 64.6
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.8e-297 1025.8 815 66.6
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.8e-297 1025.8 799 67.2
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 7.0e-297 1023.8 810 66.4
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 2.2e-295 1018.8 810 65.4
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 2.9e-295 1018.5 808 67.3
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 8.5e-295 1016.9 814 65.4
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.1e-293 1010.7 782 66.4
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.7e-290 1001.5 813 65.8
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 8.3e-290 1000.3 823 64.5
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 5.4e-289 997.7 795 66.0
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 5.4e-289 997.7 785 66.4
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 7.0e-289 997.3 791 65.7
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.2e-285 986.5 798 65.8
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.1e-285 985.7 794 64.2
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 3.6e-285 984.9 813 62.4
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.7e-285 984.6 810 64.4
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 5.7e-283 977.6 794 63.5
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 4.9e-282 974.5 810 63.8
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.8e-281 972.6 732 69.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 5.4e-281 971.1 823 61.0
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 5.9e-280 967.6 833 61.9
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 3.4e-275 951.8 792 62.2
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 9.5e-270 933.7 651 78.0
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 3.6e-269 931.8 795 62.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.1e-268 930.2 820 60.7
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.1e-268 928.7 821 61.0
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.1e-265 920.2 822 60.1
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.2e-265 918.7 827 59.6
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.1e-265 918.3 825 59.5
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.1e-265 918.3 821 59.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 7.1e-265 917.5 821 59.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 3.0e-263 912.1 827 58.9
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.3e-262 908.3 835 58.3
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 8.9e-260 900.6 825 59.6
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.0e-259 899.4 832 59.7
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.0e-259 899.4 832 59.7
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.0e-259 899.4 832 59.7
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 3.8e-258 895.2 825 59.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.2e-250 869.4 795 58.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.3e-239 832.8 819 55.7
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-237 826.6 652 66.4
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.1e-237 824.3 652 66.3
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 2.7e-224 782.7 797 55.6
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.0e-207 727.6 641 61.5
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.6e-200 703.7 569 63.3
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 8.0e-192 674.9 457 74.2
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.9e-177 627.1 853 45.6
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 4.2e-177 625.9 461 71.1
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 5.7e-174 615.5 459 68.8
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.9e-169 600.5 487 66.5
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 4.3e-169 599.4 467 67.7
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.3e-167 593.6 512 60.7
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.3e-167 593.6 465 66.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.7e-165 587.4 465 65.2
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.1e-164 584.7 499 62.9
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 5.9e-163 578.9 484 64.7
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.7e-162 577.4 513 59.1
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.1e-160 570.5 734 46.9
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.4e-159 567.8 485 61.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.4e-159 567.8 485 61.6
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 2.5e-153 547.0 715 45.3
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 2.1e-152 543.9 484 59.1
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.7e-152 542.7 461 62.9
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.4e-151 541.2 461 61.8
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.4e-151 541.2 453 63.6
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.5e-150 537.7 463 61.1
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.7e-149 534.3 465 62.6
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.2e-149 533.9 414 66.2
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.4e-148 531.2 461 61.0
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.4e-142 510.0 457 60.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.2e-139 501.5 705 44.1
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.9e-138 496.5 463 57.2
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.5e-137 493.8 449 57.5
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.3e-137 493.0 480 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.1e-132 478.4 756 40.3
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 4.2e-132 476.5 454 56.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 3.5e-131 473.4 456 56.8
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 4.6e-131 473.0 456 56.8
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.0e-130 471.9 469 55.7
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.1e-127 461.8 750 39.6
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.9e-127 459.1 299 78.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 5.3e-119 433.0 456 52.4
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.9e-108 397.9 657 41.7
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.3e-106 391.7 312 65.1
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 6.9e-95 352.8 265 70.9
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 7.2e-92 342.8 461 43.2
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.5e-89 335.1 224 79.0
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.2e-80 304.7 197 80.2
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.1e-63 247.7 360 40.8
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 3.1e-63 247.7 790 29.1
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.9e-60 238.4 147 76.9
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.5e-60 238.0 175 71.4
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.5e-60 238.0 175 71.4
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 3.7e-56 224.2 396 38.9
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 9.2e-55 219.5 147 70.1
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 2.3e-53 214.9 140 72.1
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 3.7e-48 197.6 431 32.0
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.6e-35 154.5 151 53.6
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.1e-34 151.4 151 52.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.9e-28 132.1 90 66.7
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 3.8e-24 117.9 70 77.1
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.6e-22 112.5 96 58.3
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.2e-19 102.8 87 67.8
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.0e-13 83.2 54 70.4
MD08G1099400 Malus domestica HOM05D031194 ORTHO05D029699 7.6e-09 67.0 63 57.1


User provided reference genes

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