Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2848.5 1514 100.0
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2825.8 1503 100.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2378.6 1513 83.0
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2344.7 1513 82.3
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2131.7 1522 75.5
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2094.3 1517 76.5
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 2092.8 1487 75.3
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2070.8 1517 73.4
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2069.3 1520 74.4
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2055.0 1508 73.4
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2052.7 1518 73.3
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2050.0 1516 73.4
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2015.7 1515 72.3
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2012.7 1516 71.4
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2008.0 1511 73.3
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2006.9 1517 73.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2004.6 1513 73.1
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2001.1 1519 70.8
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 1999.2 1514 72.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1996.5 1516 71.5
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 1991.5 1514 71.3
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1991.1 1516 71.7
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 1989.5 1517 72.7
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 1974.9 1511 71.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 1968.4 1507 71.9
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1967.2 1584 69.3
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 1959.5 1516 69.8
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 1951.8 1518 69.6
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1949.9 1515 69.6
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 1948.7 1508 69.8
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 1946.4 1516 70.6
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 1937.5 1518 69.4
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 1936.0 1512 71.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1935.2 1531 69.8
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1932.1 1515 69.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1931.4 1515 68.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1924.1 1551 69.2
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 1924.1 1345 75.9
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 1919.8 1564 67.5
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1918.3 1506 71.7
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 1899.4 1507 71.1
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 1897.5 1581 68.8
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 1892.5 1686 65.2
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 1886.3 1514 70.5
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1883.6 1516 67.7
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1883.6 1516 67.7
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 1883.6 1515 69.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1881.3 1575 67.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 1878.2 1517 67.8
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1873.6 1515 68.1
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 1871.3 1512 67.8
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 1870.1 1665 62.8
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 1864.0 1513 66.8
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1858.6 1516 68.4
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 1852.0 1516 67.4
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 1849.3 1505 67.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 1846.2 1510 67.8
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1835.5 1522 67.1
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1824.7 1516 67.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1818.5 1516 66.6
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1815.8 1813 58.8
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1813.1 1508 66.9
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1811.2 1486 66.9
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 1800.0 1516 64.9
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 1767.7 1512 66.1
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1730.7 1521 64.9
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1727.6 1528 64.4
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1727.6 1538 64.0
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1713.7 1594 60.2
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1711.0 1513 64.6
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1710.3 1538 62.4
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1701.4 1517 65.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1671.8 1534 63.4
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1665.6 1527 63.5
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1664.4 1527 63.5
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1650.6 1620 59.3
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1645.9 1529 63.1
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1640.6 1513 61.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1640.2 1510 62.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1637.5 1517 62.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1622.1 1512 61.1
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1620.1 1514 62.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1612.0 1519 61.3
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1610.5 1518 63.0
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1609.7 1510 61.5
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1608.6 1510 61.2
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1591.6 1510 60.7
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1563.9 1253 69.8
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1550.0 1279 68.8
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1543.9 1199 72.1
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1497.6 1009 76.9
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1493.8 1518 59.2
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1453.3 1513 57.0
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1408.7 1604 54.8
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1396.3 1507 57.0
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1390.6 1208 65.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1379.0 978 75.2
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1349.0 1591 51.9
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1293.9 1450 52.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1253.8 1521 52.5
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1210.7 1079 65.8
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1098.2 1234 52.3
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 4.1e-311 1072.0 830 68.9
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.1e-299 1033.1 1139 56.4
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 9.6e-292 1007.7 692 76.9
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.4e-290 1003.0 871 57.6
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.2e-270 937.6 570 83.2
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 9.1e-258 894.8 857 63.9
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.8e-220 769.2 983 52.0
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.1e-209 734.2 449 84.0
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 2.3e-205 720.7 960 46.5
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.3e-205 720.7 482 76.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.1e-169 601.3 866 40.2
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.2e-140 505.8 307 82.7
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.1e-129 468.4 937 33.6
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.7e-126 458.8 549 52.6
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.0e-115 422.9 502 58.0
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.3e-94 352.8 239 77.8
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.9e-94 350.9 299 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 5.1e-91 340.9 214 77.6
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.6e-89 334.7 262 69.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.0e-79 302.4 410 48.8
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.1e-77 296.6 734 30.0
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 4.2e-69 268.1 590 31.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.3e-66 258.5 226 64.2
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.7e-62 246.1 521 36.3
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 5.8e-55 221.1 245 53.9
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.5e-53 214.5 222 56.8
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.9e-40 171.0 207 47.3
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.8e-38 165.2 89 84.3
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.0e-35 157.1 143 75.5
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-28 132.9 110 68.2
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.1e-26 127.1 75 86.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.3e-26 125.6 105 67.6
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 3.1e-24 119.0 69 87.0
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.5e-21 110.2 92 65.2
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.7e-17 96.7 107 53.3
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 4.8e-17 95.1 68 67.6
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 6.3e-17 94.7 97 52.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.4e-16 93.6 73 68.5
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.4e-16 93.6 103 50.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.4e-16 92.8 58 77.6
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.4e-16 92.8 58 77.6
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 2.0e-15 89.7 58 75.9
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 4.2e-13 82.0 41 90.2
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.2e-12 80.5 95 48.4
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.1e-12 79.7 50 86.0
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 3.0e-11 75.9 77 55.8
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 8.8e-11 74.3 48 72.9
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 8.8e-11 74.3 171 34.5
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 5.7e-10 71.6 36 88.9
TPR.G21790 Trifolium pratense HOM05D003986 ORTHO05D411817 2.7e-07 62.8 51 68.6
DCAR_017313 Daucus carota HOM05D000792 ORTHO05D004195 3.8e-06 58.9 190 32.1
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 5.0e-06 58.5 111 34.2
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 5.0e-06 58.5 59 52.5


User provided reference genes

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