Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1478.4 741 100.0
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1293.1 724 88.8
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1290.4 726 88.4
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1263.1 733 86.5
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1216.1 747 82.6
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1213.4 735 83.8
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1205.7 749 80.6
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1203.7 727 83.1
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1190.6 731 80.4
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1189.9 732 81.0
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1163.3 727 80.5
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1161.0 733 79.9
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1158.3 726 79.3
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1155.2 729 78.7
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1152.9 724 79.7
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1149.0 730 78.5
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1144.8 744 77.4
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1144.4 737 79.0
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1140.6 736 79.3
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1137.1 735 77.1
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1135.2 732 77.3
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1134.0 729 78.2
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1134.0 723 79.0
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1133.6 722 78.1
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1132.5 730 78.5
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1130.2 735 77.4
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1128.6 723 78.6
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1125.5 727 77.0
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1113.6 727 76.6
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1112.4 753 74.6
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1111.7 752 74.5
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1108.2 725 77.0
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1107.8 748 75.3
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1102.4 728 76.2
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 0.0e+00 1102.0 747 73.4
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1100.1 726 76.6
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1099.3 750 73.9
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 755 73.8
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1097.4 743 74.4
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 0.0e+00 1097.0 724 76.9
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1096.6 728 76.2
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1095.1 743 74.3
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1093.2 748 73.7
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1088.9 725 75.0
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 0.0e+00 1087.4 725 75.9
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1087.0 723 74.8
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1086.2 769 72.2
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1086.2 773 72.3
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1085.1 737 74.4
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1081.6 727 76.9
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1079.7 727 76.8
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 0.0e+00 1078.5 727 76.2
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 0.0e+00 1075.8 749 72.6
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 7.6e-311 1070.1 722 73.0
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 1.9e-309 1065.4 733 74.1
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 5.5e-309 1063.9 743 72.3
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 5.2e-307 1057.4 730 73.7
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 5.7e-306 1053.9 727 72.8
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.4e-304 1049.3 730 73.7
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 3.5e-303 1044.6 722 73.3
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.9e-302 1041.6 726 74.5
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 4.7e-300 1034.2 727 71.9
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.0e-299 1033.1 739 72.9
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.8e-299 1032.3 727 74.6
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 7.5e-290 1000.3 726 73.4
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.3e-286 989.6 891 60.4
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 2.3e-286 988.8 727 68.6
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 3.0e-286 988.4 723 70.3
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 8.6e-286 986.9 727 69.1
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 2.5e-285 985.3 729 68.3
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 8.9e-283 976.9 727 67.4
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 1.3e-281 973.0 729 67.5
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 2.2e-281 972.2 729 67.2
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 2.2e-281 972.2 729 67.2
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 8.3e-281 970.3 727 67.8
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 1.1e-280 969.9 729 67.2
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 4.1e-280 968.0 514 90.5
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 9.2e-280 966.8 510 91.2
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 7.8e-279 963.8 730 67.5
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 5.1e-278 961.1 753 65.5
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 5.1e-278 961.1 721 68.1
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.1e-276 955.7 730 66.2
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.9e-273 945.3 723 66.0
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 2.9e-273 945.3 726 67.4
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 9.2e-272 940.3 726 66.9
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.2e-271 939.9 657 73.5
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.6e-271 939.5 726 65.4
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 2.8e-268 928.7 510 87.8
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.8e-265 918.3 604 76.3
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 4.9e-265 917.9 707 66.8
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.6e-260 901.7 743 64.1
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.5e-258 896.3 726 64.6
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 9.9e-250 867.1 726 63.4
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 5.6e-245 851.3 632 68.7
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.1e-235 820.5 732 58.5
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 2.4e-235 819.3 717 60.5
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 2.6e-234 815.8 778 54.5
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 8.2e-220 767.7 806 51.7
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 4.7e-215 751.9 735 53.2
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 8.8e-206 721.1 653 58.2
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.0e-198 697.6 730 52.6
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.6e-197 693.0 730 52.3
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 8.3e-196 688.0 730 52.1
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.8e-195 686.8 730 52.2
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 7.0e-195 684.9 724 54.3
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 9.1e-195 684.5 717 51.2
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 6.1e-191 671.8 638 53.3
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 8.6e-177 624.8 334 88.0
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.9e-168 597.0 426 73.7
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.9e-132 476.1 409 59.9
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 5.6e-128 462.6 420 58.8
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.7e-106 390.6 223 83.0
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.1e-104 385.2 240 79.2
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.3e-92 345.1 182 90.7
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 8.5e-92 342.4 719 32.3
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 5.5e-91 339.7 681 33.9
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 1.6e-77 295.0 333 53.5
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 7.7e-77 292.7 727 29.7
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.5e-67 261.9 253 60.5
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.4e-65 255.4 211 67.8
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 8.9e-65 252.7 211 66.8
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 5.9e-61 240.0 137 82.5
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.3e-59 233.8 167 69.5
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.2e-55 221.5 132 82.6
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.5e-48 198.7 126 77.8
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 1.4e-46 192.2 109 81.7
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.4e-41 175.6 192 56.2
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.6e-34 152.1 155 56.8
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 8.1e-34 149.8 148 56.1
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 5.2e-33 147.1 96 75.0
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.2e-31 141.7 129 64.3
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 6.0e-21 107.1 107 59.8
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.0e-20 104.8 55 85.5
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 6.2e-18 97.1 148 43.9
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.1e-17 96.3 66 71.2
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 1.8e-17 95.5 62 74.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 9.9e-16 89.7 544 20.8
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.6e-13 82.4 496 23.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.1e-09 69.7 499 21.2
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 6.9e-09 67.0 59 54.2
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.0e-09 66.6 72 50.0
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 2.0e-08 65.5 109 38.5
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 2.0e-08 65.5 109 38.5
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 3.4e-08 64.7 109 38.5
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 3.4e-08 64.7 349 21.2
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 4.5e-08 64.3 491 20.0
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 5.8e-08 63.9 526 18.6
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.0e-07 63.2 106 37.7
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 1.0e-07 63.2 547 20.7
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 1.3e-07 62.8 77 44.2
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.3e-07 62.8 60 51.7
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 1.3e-07 62.8 369 22.0
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 2.2e-07 62.0 343 21.3
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 7.1e-06 57.0 348 21.3
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 9.3e-06 56.6 309 22.0


User provided reference genes

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