Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 3512.2 1807 100.0
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2997.6 1825 84.8
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2826.6 1900 79.2
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2822.7 1841 81.4
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2788.1 1773 82.3
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2754.9 1837 78.6
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2742.2 1876 77.3
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2723.3 1852 77.2
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2720.7 1836 77.3
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2694.8 1840 76.5
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2694.5 1845 76.9
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2692.1 1807 77.8
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2684.4 1835 77.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2674.4 1831 77.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2671.3 1816 77.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2670.2 1831 76.4
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2662.5 1838 75.1
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2655.9 1834 75.9
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2655.6 1833 76.5
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2654.8 1811 76.7
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2653.6 1822 76.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2614.0 1847 75.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2614.0 1869 74.4
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2612.0 1832 75.4
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2607.8 1835 75.1
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2598.9 1818 75.3
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2597.0 1841 74.4
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2593.1 1818 75.1
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2585.4 1823 74.6
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2585.4 1834 74.8
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2575.0 1839 74.2
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2565.4 1811 74.9
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2555.4 1831 73.1
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2550.8 1830 73.2
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2550.4 1832 73.1
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2545.8 1842 73.8
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2541.1 1832 73.4
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2535.0 1831 72.5
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2533.1 1829 72.7
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2532.3 1837 73.2
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2528.4 1800 73.8
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2528.4 1823 73.0
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2514.2 1846 73.0
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2511.5 1846 73.0
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2506.5 1824 72.4
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2503.0 1846 73.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2502.2 1831 71.6
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2488.4 1844 72.8
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2486.4 1901 70.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2477.2 1833 72.0
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2473.4 1827 72.2
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2468.3 1834 71.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2468.3 1834 71.0
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2467.2 1835 70.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2466.0 1814 72.3
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2463.7 1837 71.0
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2459.9 1834 70.7
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2453.7 1836 70.8
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2436.4 1828 71.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2417.5 1823 70.7
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2416.7 1834 70.9
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2393.2 1842 69.8
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2379.4 1815 69.0
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2378.6 1825 69.6
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2378.2 1828 69.9
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2377.4 1822 70.3
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2377.1 1824 70.3
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2356.3 1724 71.8
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2355.5 1848 68.2
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2350.5 1820 69.6
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2347.8 1831 69.3
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2337.4 1817 69.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2308.5 1832 67.5
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2303.1 1813 68.7
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2268.4 1816 67.8
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2230.3 1813 67.5
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2224.9 1818 67.2
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2193.3 1810 67.0
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2159.8 1818 66.0
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2159.8 1813 65.5
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2158.3 1757 66.5
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2150.2 1818 65.8
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2149.0 1818 65.3
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2140.2 1825 65.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2137.5 1813 66.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2116.3 1817 64.7
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2107.4 1808 64.2
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 2053.1 1801 63.1
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2037.7 1863 59.7
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2022.3 1809 62.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2021.5 1809 62.8
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2014.6 1833 60.7
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2010.3 1803 62.8
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1996.5 1824 62.1
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1883.6 1210 80.9
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1854.3 1373 71.4
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1834.3 1825 56.7
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1833.5 1472 67.8
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1813.1 1817 55.6
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1782.3 1773 58.0
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1728.4 1340 68.9
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1719.1 1331 68.7
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1688.7 1573 61.9
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1688.7 1675 57.6
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1651.3 1281 68.1
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1605.1 1350 65.3
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1501.1 1785 51.7
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1500.0 1188 67.0
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1379.0 1983 44.4
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1318.1 1188 64.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1306.2 1000 69.5
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1267.7 1388 54.5
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1240.3 1836 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1204.1 1945 40.9
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1188.7 1134 58.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1185.2 1940 40.2
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1147.5 1982 38.4
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1076.2 867 66.4
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.8e-279 966.1 1358 45.5
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.9e-257 894.0 1463 40.6
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.9e-234 817.0 521 81.0
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.1e-228 797.0 640 64.8
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 4.6e-216 756.5 481 79.4
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 9.3e-201 705.7 466 76.6
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 8.7e-199 699.1 610 61.8
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.4e-193 681.8 491 75.4
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.8e-175 621.7 556 62.2
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 8.8e-175 619.4 381 83.7
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 7.2e-169 599.7 627 54.7
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 2.3e-167 594.7 338 90.5
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 8.8e-167 592.8 360 82.2
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 7.0e-164 583.2 466 67.2
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.9e-162 577.8 361 78.9
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.9e-162 577.8 423 67.4
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.9e-141 508.1 392 71.2
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 7.8e-139 500.0 323 76.5
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 3.6e-128 464.5 402 62.7
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 7.6e-126 456.8 259 88.4
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-119 436.0 267 88.4
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 5.1e-114 417.5 432 57.9
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.7e-83 315.5 302 60.3
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.7e-83 315.5 301 60.5
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.5e-81 309.7 309 59.9
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 2.3e-50 206.1 123 84.6
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 3.0e-50 205.7 143 73.4
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.6e-22 113.6 70 82.9
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 7.8e-22 111.3 118 52.5
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 3.9e-21 109.0 71 80.3
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 6.2e-19 101.7 70 74.3
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.4e-15 90.5 631 21.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.1e-14 86.7 70 61.4
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.1e-14 86.7 66 68.2
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 2.7e-14 86.3 68 63.2
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 4.6e-14 85.5 204 28.4
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 7.8e-14 84.7 70 60.0
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 1.0e-13 84.3 96 52.1
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.6e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.3e-08 67.4 188 32.4
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.9e-07 63.5 179 28.5
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 2.4e-07 63.2 37 81.1
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 7.1e-07 61.6 72 52.8


User provided reference genes

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