Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1867.0 947 100.0
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1382.5 1046 74.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1197.2 1044 65.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1189.5 1062 65.3
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1184.5 1043 64.7
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1174.1 1044 64.9
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1111.7 1056 62.1
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1108.2 1050 61.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1105.5 1047 61.9
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1090.5 1052 60.4
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1089.3 1018 61.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1080.5 1015 61.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 6.5e-312 1074.3 1031 60.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 1.3e-311 1072.8 1051 59.4
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 1.7e-310 1069.3 1050 59.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.9e-310 1068.5 1022 60.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 1.0e-307 1060.1 1046 59.0
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.3e-307 1058.9 1041 59.8
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.1e-306 1056.6 1022 59.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 1.9e-306 1055.8 1036 58.6
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 1.9e-306 1055.8 1051 59.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 2.5e-306 1055.4 1032 58.4
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 1.2e-305 1053.1 1051 59.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 3.6e-305 1051.6 1013 58.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 4.7e-305 1051.2 1027 59.6
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 1.2e-303 1046.6 1030 59.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.2e-303 1046.6 1028 59.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 2.0e-303 1045.8 1044 58.2
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 2.6e-303 1045.4 1072 57.3
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 2.6e-303 1045.4 1040 59.1
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 3.4e-303 1045.0 1043 58.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 5.8e-303 1044.3 1049 57.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 7.6e-303 1043.9 1041 57.9
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 7.6e-303 1043.9 1027 59.5
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 2.2e-302 1042.3 1063 56.8
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 4.9e-302 1041.2 1092 57.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 1.1e-301 1040.0 1026 59.6
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 1.4e-301 1039.6 1021 58.3
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 2.4e-301 1038.9 1055 57.4
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 5.4e-301 1037.7 1044 58.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 7.8e-300 1033.9 1043 58.4
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 2.3e-299 1032.3 1010 58.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 3.0e-299 1031.9 1029 58.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 6.6e-299 1030.8 1050 57.8
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 1.5e-298 1029.6 1033 57.6
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 1.9e-298 1029.2 1039 57.4
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 9.6e-298 1026.9 1030 57.9
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 3.6e-297 1025.0 1032 58.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 4.8e-297 1024.6 1040 58.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 1.1e-296 1023.5 1072 56.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 2.4e-296 1022.3 1041 56.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 4.0e-296 1021.5 1052 57.2
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 5.3e-296 1021.1 1033 58.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 9.0e-296 1020.4 1018 58.4
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 7.6e-295 1017.3 1041 57.3
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 7.6e-295 1017.3 1045 57.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 2.9e-294 1015.4 1036 57.0
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.2e-293 1011.9 1039 57.7
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 4.2e-293 1011.5 1035 56.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 7.1e-293 1010.7 1036 57.5
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 7.1e-293 1010.7 1036 57.5
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 9.3e-293 1010.4 1042 57.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.3e-291 1006.5 1038 57.2
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.8e-291 1006.1 1037 57.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.3e-291 1005.7 1039 57.2
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 3.9e-291 1005.0 1014 58.1
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 4.3e-290 1001.5 1046 57.4
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 7.4e-290 1000.7 1035 56.8
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 9.6e-290 1000.3 1044 56.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 2.1e-289 999.2 992 59.4
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 2.8e-289 998.8 1019 57.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 6.9e-288 994.2 928 60.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 1.2e-287 993.4 1002 58.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.3e-286 989.9 1040 56.6
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 1.3e-286 989.9 1027 57.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 1.3e-286 989.9 1038 56.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.2e-286 989.2 1031 56.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 5.5e-285 984.6 1022 56.8
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 5.5e-285 984.6 1044 56.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.5e-284 981.9 1068 56.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 8.7e-283 977.2 1031 54.9
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 3.4e-279 965.3 1043 55.1
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 2.5e-277 959.1 1047 55.2
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 2.7e-276 955.7 1044 55.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 1.0e-275 953.7 1046 54.3
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 1.1e-274 950.3 1055 54.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 1.5e-274 949.9 1048 55.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 9.7e-274 947.2 1044 54.9
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 1.6e-273 946.4 1044 54.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 1.6e-273 946.4 1041 54.9
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 2.2e-273 946.0 1043 54.7
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 1.8e-272 943.0 997 56.5
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 2.0e-271 939.5 1045 54.6
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 2.0e-271 939.5 1082 52.7
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 4.5e-271 938.3 1025 55.1
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.3e-270 936.8 1054 54.3
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 1.7e-270 936.4 1055 54.3
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.2e-270 936.0 1054 53.2
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 2.9e-270 935.6 1054 54.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.1e-269 933.7 899 60.1
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 3.2e-269 932.2 1024 54.8
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.2e-268 930.2 899 60.2
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.0e-267 927.2 1027 54.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 1.0e-267 927.2 1039 53.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 1.8e-267 926.4 1042 54.1
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.1e-267 924.9 1040 53.9
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 5.1e-267 924.9 986 56.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.1e-266 923.7 987 56.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 5.7e-266 921.4 1051 52.9
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.2e-265 919.5 1027 54.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 2.8e-265 919.1 1040 53.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 1.5e-263 913.3 1031 53.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.4e-263 912.1 922 58.5
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 1.7e-262 909.8 1040 53.8
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.9e-261 906.4 998 54.8
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 9.4e-261 904.0 1017 53.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.7e-260 902.5 1038 52.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 3.3e-258 895.6 1059 52.5
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 4.8e-257 891.7 1049 52.1
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 4.2e-253 878.6 1038 52.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.7e-246 856.7 1025 51.3
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 8.2e-241 837.8 1050 50.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.6e-239 833.6 1029 50.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 4.4e-234 815.5 938 52.2
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 4.4e-234 815.5 858 55.9
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.8e-233 812.8 1024 50.1
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 8.9e-227 791.2 1003 49.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.5e-223 778.9 1028 48.0
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 2.9e-222 776.2 1046 48.3
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 4.4e-202 709.1 992 46.4
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.2e-201 706.8 920 48.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.9e-201 705.7 717 58.6
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.1e-195 688.0 873 49.8
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.5e-189 667.5 813 51.0
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.1e-183 647.1 731 55.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.0e-170 604.0 999 41.2
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 7.4e-165 585.5 1018 40.5
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.9e-161 573.5 993 40.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.9e-161 572.8 960 40.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.6e-154 550.4 1004 37.2
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.3e-149 533.5 670 50.1
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 4.8e-148 529.6 808 41.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.0e-146 524.2 711 49.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.2e-144 516.9 791 41.1
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.5e-128 464.9 872 38.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.4e-117 426.8 781 39.7
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.1e-115 420.6 597 44.7
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.0e-114 417.9 675 42.7
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.4e-109 400.6 925 33.5
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.0e-107 392.9 629 40.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 9.5e-96 355.9 519 44.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.9e-88 331.6 624 39.7
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.2e-85 322.4 404 49.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.4e-83 315.5 496 44.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 9.6e-72 276.2 1000 27.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.2e-63 246.9 320 48.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.4e-51 209.1 244 52.5
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.3e-47 196.1 275 46.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.8e-41 175.6 328 39.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.1e-32 146.4 292 37.0
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.2e-31 140.2 210 41.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-30 139.4 152 54.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.4e-30 138.7 213 40.4
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.1e-30 138.3 152 50.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 3.4e-29 134.8 456 28.3
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 8.5e-28 130.2 147 54.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.4e-25 122.9 507 25.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 6.7e-25 120.6 222 40.5
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.2e-21 109.8 130 49.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 4.5e-21 107.8 299 29.1
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.1e-18 97.4 96 52.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.8e-17 95.9 114 47.4
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.0e-17 94.7 84 56.0
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.2e-17 94.4 81 58.0
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.0e-12 80.1 62 69.4
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 8.0e-10 70.5 47 80.9
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 3.4e-08 65.1 61 63.9
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 7.0e-06 57.4 44 72.7


User provided reference genes

Program Settings