Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 0.0e+00 1233.8 608 100.0
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 5.4e-310 1067.0 635 83.5
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 4.4e-304 1047.3 680 78.5
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.4e-297 1025.8 599 82.6
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 6.6e-292 1006.9 597 82.4
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 2.8e-290 1001.5 596 81.2
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.7e-285 984.9 555 87.6
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 3.9e-284 981.1 599 79.8
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 3.9e-284 981.1 597 80.7
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 8.1e-282 973.4 597 79.2
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.4e-281 972.6 597 80.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 2.0e-280 968.8 600 79.7
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 2.0e-280 968.8 599 78.3
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.1e-278 963.0 602 77.7
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.1e-277 958.7 597 78.6
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 7.8e-277 956.8 597 78.6
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.7e-276 955.7 597 77.2
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.9e-276 954.5 597 79.2
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.9e-275 952.2 614 77.5
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 9.6e-275 949.9 597 77.4
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 3.6e-274 948.0 597 77.9
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 6.2e-274 947.2 597 77.9
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 6.9e-273 943.7 597 77.4
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 8.9e-273 943.3 597 76.9
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.2e-272 943.0 598 77.4
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 2.0e-272 942.2 597 77.4
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 4.4e-272 941.0 597 76.4
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 9.9e-272 939.9 601 77.4
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 8.4e-271 936.8 597 76.9
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 2.7e-269 931.8 597 77.1
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 3.5e-269 931.4 597 75.5
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 5.1e-268 927.5 597 77.2
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 4.3e-267 924.5 598 76.6
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 5.6e-267 924.1 599 76.0
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 3.1e-265 918.3 599 76.1
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.2e-264 916.4 600 75.0
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 2.6e-264 915.2 597 77.1
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 4.2e-262 907.9 621 72.9
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 2.7e-261 905.2 640 71.2
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 6.7e-260 900.6 517 86.8
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.5e-259 899.4 599 73.8
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 1.9e-259 899.0 570 74.9
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.9e-259 899.0 599 74.0
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 2.5e-259 898.7 586 75.9
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 3.6e-258 894.8 636 70.4
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 4.8e-258 894.4 599 74.0
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 2.6e-256 888.6 597 73.0
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 7.6e-256 887.1 597 72.4
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 1.7e-255 885.9 595 74.6
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 2.9e-255 885.2 597 72.4
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 8.4e-255 883.6 605 73.7
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.1e-254 883.2 597 73.2
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 1.9e-254 882.5 597 72.4
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 3.9e-252 874.8 597 73.4
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 3.3e-251 871.7 647 68.2
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 9.6e-251 870.2 598 71.4
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 3.1e-249 865.1 551 78.8
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 2.0e-248 862.4 595 69.9
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 2.9e-247 858.6 598 70.6
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 2.9e-247 858.6 536 78.9
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 2.9e-247 858.6 595 69.4
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.4e-247 857.1 599 71.6
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.5e-246 855.5 599 71.6
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 4.2e-246 854.7 611 72.2
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 7.1e-246 854.0 550 77.1
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 1.3e-242 843.2 597 70.0
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.3e-236 822.4 537 76.4
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 6.7e-236 820.8 597 69.3
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 3.3e-235 818.5 597 67.2
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 1.8e-233 812.8 601 67.9
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 7.7e-232 807.4 511 78.1
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 2.2e-231 805.8 580 70.0
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 9.4e-230 800.4 657 63.9
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 6.1e-229 797.7 532 72.7
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 6.7e-228 794.3 597 64.5
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.1e-227 793.5 589 68.4
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 3.3e-227 792.0 597 63.8
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 3.7e-226 788.5 600 67.3
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.7e-224 780.8 688 59.7
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 7.7e-224 780.8 597 68.7
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 1.1e-219 766.9 597 62.6
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 1.3e-218 763.5 595 63.2
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 2.8e-218 762.3 597 63.7
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.1e-217 760.4 600 62.5
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 5.3e-217 758.1 624 62.7
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 2.2e-215 752.7 574 67.6
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 2.2e-215 752.7 600 62.3
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 2.9e-215 752.3 600 61.5
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.8e-215 751.9 600 62.2
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 6.5e-215 751.1 596 62.1
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.1e-214 750.4 599 61.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.4e-212 743.4 487 75.6
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 6.7e-212 741.1 600 61.8
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 7.7e-208 727.6 598 61.2
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 1.2e-200 703.7 562 61.6
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 7.0e-185 651.4 533 64.0
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.6e-157 560.5 382 72.5
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.0e-147 526.9 399 65.9
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 3.0e-143 513.1 610 47.7
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.3e-130 471.1 433 54.7
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 3.3e-126 456.4 602 42.0
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 3.6e-120 436.4 531 48.6
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 4.4e-110 402.9 245 80.0
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 3.0e-87 327.0 205 76.6
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.7e-82 311.2 251 60.2
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.2e-80 305.1 289 55.7
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-75 286.2 626 34.3
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.3e-61 241.9 175 64.0
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 7.1e-52 209.5 165 66.1
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.9e-41 174.9 144 61.8
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 3.1e-39 167.5 112 76.8
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 4.2e-36 157.1 119 60.5
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 2.3e-34 151.4 81 84.0
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 8.4e-29 132.9 65 90.8
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 8.7e-18 96.3 325 24.9
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 3.3e-17 94.4 86 60.5
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 9.6e-17 92.8 52 88.5
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 4.6e-11 73.9 45 68.9
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 4.6e-11 73.9 54 61.1
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.5e-09 68.9 32 100.0
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 2.8e-08 64.7 44 63.6
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.1e-07 62.8 62 51.6
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 2.6e-06 58.2 61 54.1


User provided reference genes

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