Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 4.4e-164 581.3 300 100.0
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.9e-159 565.8 300 98.0
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.9e-98 363.2 300 66.7
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.5e-84 315.8 297 60.9
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 6.5e-83 311.6 302 59.6
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 1.5e-82 310.5 302 59.3
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 9.4e-82 307.8 299 59.9
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.8e-80 303.5 302 58.6
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 6.7e-80 301.6 211 77.7
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 2.0e-79 300.1 285 62.1
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 4.8e-78 295.4 389 50.6
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 2.0e-76 290.0 303 57.8
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 2.2e-75 286.6 296 56.4
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 6.5e-75 285.0 292 57.9
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 8.5e-75 284.6 282 60.3
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 3.6e-73 279.3 300 56.0
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 8.0e-73 278.1 303 55.4
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 2.3e-72 276.6 304 57.6
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 2.0e-71 273.5 242 67.4
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 5.7e-71 271.9 314 53.8
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 5.7e-71 271.9 292 56.5
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 1.3e-70 270.8 300 53.7
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 6.3e-70 268.5 303 55.4
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 1.6e-68 263.8 304 55.3
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 1.6e-68 263.8 303 54.1
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 2.7e-68 263.1 279 56.6
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 7.7e-68 261.5 356 49.2
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 2.9e-67 259.6 280 55.0
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 1.9e-66 256.9 266 57.9
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 3.2e-66 256.1 338 49.4
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 4.2e-66 255.8 312 54.2
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 2.1e-65 253.4 300 53.3
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 8.0e-65 251.5 276 53.3
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 2.3e-64 250.0 281 54.1
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 8.8e-64 248.1 308 51.9
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 1.5e-63 247.3 264 58.0
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 2.0e-63 246.9 305 50.2
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 2.0e-63 246.9 289 54.7
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 2.6e-63 246.5 311 54.0
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 2.6e-63 246.5 245 57.6
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 4.4e-63 245.7 250 57.2
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 4.4e-63 245.7 285 53.3
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 5.7e-63 245.4 250 57.6
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 5.7e-63 245.4 307 51.5
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 9.8e-63 244.6 298 51.7
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 1.3e-62 244.2 250 57.2
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 1.7e-62 243.8 303 52.8
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 6.3e-62 241.9 209 64.1
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 6.3e-62 241.9 247 56.3
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 1.8e-61 240.4 212 60.4
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 7.0e-61 238.4 307 51.1
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 2.7e-60 236.5 286 52.1
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 3.8e-59 232.6 293 49.1
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 5.0e-59 232.3 220 60.5
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 5.0e-59 232.3 373 47.7
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 8.6e-59 231.5 257 55.3
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 1.1e-58 231.1 245 55.5
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 2.5e-58 229.9 260 55.0
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 5.6e-58 228.8 310 48.4
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 7.3e-58 228.4 212 59.0
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 2.8e-57 226.5 282 49.6
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 2.8e-57 226.5 278 51.1
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 3.6e-57 226.1 217 57.1
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 4.7e-57 225.7 194 64.9
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.8e-56 223.8 304 47.7
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 1.8e-56 223.8 309 46.6
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 2.3e-56 223.4 319 48.9
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 2.3e-56 223.4 275 51.6
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 4.0e-56 222.6 289 49.5
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 6.8e-56 221.9 222 55.9
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 8.9e-56 221.5 229 56.3
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 1.2e-55 221.1 307 46.3
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 1.5e-55 220.7 310 48.7
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.5e-55 220.7 292 50.3
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 2.0e-55 220.3 310 48.7
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 3.4e-55 219.5 231 57.6
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 1.3e-54 217.6 298 49.0
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 2.9e-54 216.5 210 57.6
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 3.7e-54 216.1 226 54.4
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 4.9e-54 215.7 240 55.0
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 6.4e-54 215.3 293 47.8
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 8.3e-54 214.9 206 58.3
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 8.3e-54 214.9 263 51.7
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 1.7e-51 207.2 249 49.8
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 3.0e-51 206.5 304 45.1
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 8.6e-51 204.9 305 45.9
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-50 204.5 192 59.9
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 1.9e-50 203.8 198 57.1
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 1.9e-50 203.8 304 45.7
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 4.3e-50 202.6 218 54.1
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 5.6e-50 202.2 291 45.7
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 7.3e-50 201.8 270 46.3
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 1.2e-49 201.1 224 52.2
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.0e-48 198.0 293 48.1
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 2.3e-48 196.8 290 45.2
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 4.0e-48 196.1 305 44.3
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.0e-48 196.1 207 56.5
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.8e-40 170.6 311 39.9
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 2.6e-39 166.8 176 55.7
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 1.8e-32 144.1 239 42.3
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 6.0e-28 129.0 207 42.5
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.3e-27 127.1 218 43.1
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.3e-26 123.2 151 50.3
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 8.1e-25 118.6 224 34.8
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.8e-22 109.8 138 51.4
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 6.0e-20 102.4 189 40.2
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.6e-17 94.4 122 44.3
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 2.8e-17 93.6 62 74.2
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 3.4e-15 86.7 154 39.6
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 4.5e-15 86.3 76 60.5
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 1.7e-14 84.3 98 48.0
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.4e-13 81.3 94 51.1
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 4.2e-13 79.7 114 36.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.2e-12 78.2 110 40.9
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.1e-10 71.6 97 42.3
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.5e-10 71.2 150 39.3
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-08 65.1 42 71.4
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 3.8e-06 56.6 59 50.8


User provided reference genes

Program Settings