Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026149 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D019691 1.4e-30 135.6 64 100.0
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 2.0e-18 95.1 45 97.8
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 1.7e-12 75.5 45 77.8
Dinv24191 Davidia involucrata HOM05D000343 ORTHO05D002777 2.9e-12 74.7 45 80.0
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 6.4e-12 73.6 44 79.5
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 8.3e-12 73.2 47 72.3
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.1e-11 72.8 45 80.0
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 4.1e-11 70.9 37 91.9
GSVIVG01038740001 Vitis vinifera HOM05D000343 ORTHO05D002777 4.1e-11 70.9 44 75.0
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 9.2e-11 69.7 37 89.2
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 9.2e-11 69.7 39 82.1
QL11p020866 Quercus lobata HOM05D000343 ORTHO05D002777 9.2e-11 69.7 43 74.4
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.2e-10 69.3 45 71.1
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.2e-10 69.3 45 71.1
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 1.6e-10 68.9 45 75.6
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 2.7e-10 68.2 41 70.7
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 2.7e-10 68.2 45 73.3
RcHm_v2.0_Chr6g0271821 Rosa chinensis HOM05D000343 ORTHO05D002777 3.5e-10 67.8 42 73.8
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 3.5e-10 67.8 47 70.2
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 4.6e-10 67.4 45 68.9
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 4.6e-10 67.4 42 78.6
HanXRQChr13g0398031 Helianthus annuus HOM05D000343 ORTHO05D019691 4.6e-10 67.4 42 78.6
HanXRQChr15g0467001 Helianthus annuus HOM05D000343 ORTHO05D019691 4.6e-10 67.4 42 78.6
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 4.6e-10 67.4 45 68.9
SalBow5G0065 Salvia bowleyana HOM05D000343 ORTHO05D002777 4.6e-10 67.4 41 75.6
SalBow5G1460 Salvia bowleyana HOM05D000343 ORTHO05D002777 4.6e-10 67.4 41 75.6
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 6.0e-10 67.0 42 73.8
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 6.0e-10 67.0 45 68.9
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 7.8e-10 66.6 49 67.3
Cpa.g.sc42.54 Carica papaya HOM05D000343 ORTHO05D002777 1.0e-09 66.2 44 70.5
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.0e-09 66.2 41 78.0
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.0e-09 66.2 41 80.5
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.3e-09 65.9 45 71.1
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 1.7e-09 65.5 50 62.0
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 2.3e-09 65.1 45 71.1
MD05G1044900 Malus domestica HOM05D000343 ORTHO05D002777 2.3e-09 65.1 45 66.7
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 2.3e-09 65.1 49 65.3
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 3.0e-09 64.7 44 70.5
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 3.9e-09 64.3 36 88.9
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 5.0e-09 63.9 41 70.7
AL7G18010 Arabidopsis lyrata HOM05D000343 ORTHO05D002777 6.6e-09 63.5 39 76.9
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 6.6e-09 63.5 44 68.2
Aqoxy5G02812 Aquilegia oxysepala HOM05D000343 ORTHO05D019691 8.6e-09 63.2 44 65.9
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 8.6e-09 63.2 44 68.2
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 8.6e-09 63.2 39 76.9
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 8.6e-09 63.2 49 65.3
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 8.6e-09 63.2 42 71.4
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 8.6e-09 63.2 49 65.3
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 1.9e-08 62.0 37 78.4
Cc02_g21550 Coffea canephora HOM05D000343 ORTHO05D002777 2.5e-08 61.6 41 65.9
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 3.3e-08 61.2 39 71.8
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 4.3e-08 60.8 39 74.4
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 7.3e-08 60.1 39 71.8
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 7.3e-08 60.1 42 66.7
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 9.5e-08 59.7 39 71.8
Carub.0007s0693 Capsella rubella HOM05D000343 ORTHO05D002777 9.5e-08 59.7 41 65.9
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 9.5e-08 59.7 42 64.3
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 2.1e-07 58.5 37 70.3
Peaxi162Scf00001g01039 Petunia axillaris HOM05D000343 ORTHO05D002777 2.1e-07 58.5 34 76.5
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.1e-07 58.5 35 74.3
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 2.8e-07 58.2 42 66.7
Lalb_Chr04g0256531 Lupinus albus HOM05D000343 ORTHO05D002777 2.8e-07 58.2 37 67.6
Ciclev10030367m.g Citrus clementina HOM05D000343 ORTHO05D002777 3.6e-07 57.8 36 75.0
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 3.6e-07 57.8 36 72.2
Sopen01g047690 Solanum pennellii HOM05D000343 ORTHO05D002777 3.6e-07 57.8 36 72.2
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 4.7e-07 57.4 47 55.3
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 4.7e-07 57.4 47 59.6
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 6.2e-07 57.0 33 78.8
Lsat_1_v5_gn_3_119600 Lactuca sativa HOM05D000343 ORTHO05D019691 6.2e-07 57.0 49 63.3
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 8.1e-07 56.6 39 71.8
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 8.1e-07 56.6 39 71.8
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 8.1e-07 56.6 39 71.8
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 1.1e-06 56.2 39 71.8
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.4e-06 55.8 40 65.0
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.3e-06 55.1 38 68.4
COL.COLO4_24940 Corchorus olitorius HOM05D000343 ORTHO05D002777 2.3e-06 55.1 36 69.4
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 2.3e-06 55.1 38 68.4
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 2.3e-06 55.1 35 71.4
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 2.3e-06 55.1 36 75.0
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 3.1e-06 54.7 37 73.0
Gohir.D02G197100 Gossypium hirsutum HOM05D000343 ORTHO05D002777 3.1e-06 54.7 38 65.8
Gorai.005G220300 Gossypium raimondii HOM05D000343 ORTHO05D002777 3.1e-06 54.7 38 65.8
unitig_749.g14154 Utricularia gibba HOM05D000343 ORTHO05D002777 3.1e-06 54.7 31 83.9
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 5.2e-06 53.9 35 71.4
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 5.2e-06 53.9 30 83.3
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 5.2e-06 53.9 34 67.6
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 6.8e-06 53.5 42 64.3
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 8.9e-06 53.1 36 69.4
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 8.9e-06 53.1 41 61.0


User provided reference genes

Program Settings