Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025909 Camellia sinensis var. sinensis HOM05D066949 ORTHO05D043282 5.3e-128 461.1 240 100.0
CSS0039808 Camellia sinensis var. sinensis HOM05D066949 ORTHO05D043282 2.3e-70 269.6 200 69.0
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 9.0e-35 151.4 182 40.1
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.4e-26 122.9 221 33.5
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.5e-26 122.5 180 36.7
Rhsim04G0115000 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.9e-24 117.1 117 43.6
Rhsim05G0139900 Rhododendron simsii HOM05D007651 ORTHO05D000898 3.3e-21 106.3 110 41.8
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.3e-21 105.9 121 43.0
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.1e-19 99.8 132 40.2
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.9e-16 90.5 117 40.2
Rhsim01G0153500 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.2e-16 89.7 100 46.0
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 1.2e-15 87.8 113 36.3
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 1.6e-15 87.4 113 38.1
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 2.7e-15 86.7 107 34.6
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 3.6e-15 86.3 113 34.5
Rhsim04G0060600 Rhododendron simsii HOM05D007651 ORTHO05D000898 4.7e-15 85.9 124 38.7
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 6.1e-15 85.5 113 34.5
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 6.1e-15 85.5 113 34.5
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 6.1e-15 85.5 113 34.5
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 7.9e-15 85.1 113 34.5
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 7.9e-15 85.1 113 34.5
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 7.9e-15 85.1 112 33.9
HanXRQChr11g0325241 Helianthus annuus HOM05D007651 ORTHO05D000898 1.0e-14 84.7 114 36.0
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 1.0e-14 84.7 113 36.3
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 1.4e-14 84.3 112 34.8
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 1.4e-14 84.3 113 33.6
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 1.4e-14 84.3 113 33.6
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 1.8e-14 84.0 112 34.8
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 1.8e-14 84.0 113 36.3
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 2.3e-14 83.6 112 33.9
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 3.0e-14 83.2 112 34.8
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 3.0e-14 83.2 112 34.8
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 3.9e-14 82.8 114 36.0
CSS0020998 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D000898 5.1e-14 82.4 112 35.7
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 5.1e-14 82.4 112 33.0
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 5.1e-14 82.4 112 34.8
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 6.7e-14 82.0 107 33.6
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 6.7e-14 82.0 114 34.2
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 6.7e-14 82.0 112 33.9
HanXRQChr09g0262351 Helianthus annuus HOM05D007651 ORTHO05D000898 6.7e-14 82.0 113 33.6
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 6.7e-14 82.0 97 39.2
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 8.8e-14 81.6 107 34.6
Duzib106G0239 Durio zibethinus HOM05D007651 ORTHO05D000898 8.8e-14 81.6 112 33.9
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 1.1e-13 81.3 113 35.4
Rhsim09G0109800 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.1e-13 81.3 67 46.3
Lsat_1_v5_gn_4_155061 Lactuca sativa HOM05D007651 ORTHO05D000898 2.0e-13 80.5 114 35.1
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 4.4e-13 79.3 112 33.0
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 4.4e-13 79.3 112 33.0
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 7.4e-13 78.6 113 32.7
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 7.4e-13 78.6 137 31.4
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 7.4e-13 78.6 115 35.7
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 9.7e-13 78.2 112 33.9
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 1.7e-12 77.4 112 33.9
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 2.2e-12 77.0 112 33.0
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 3.7e-12 76.3 65 49.2
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 6.3e-12 75.5 112 33.0
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 1.8e-11 73.9 116 27.6
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.8e-11 73.9 116 27.6
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 3.1e-11 73.2 65 49.2
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.3e-11 72.4 116 26.7
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.3e-11 72.4 116 26.7
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 5.3e-11 72.4 116 26.7
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 1.0e-09 68.2 114 28.1
AUR62038800 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-09 67.4 112 29.5
CSS0035836 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 5.0e-09 65.9 65 46.2
Dinv35899 Davidia involucrata HOM05D007544 ORTHO05D009682 6.5e-09 65.5 79 39.2
AUR62000408 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.5e-09 65.1 141 29.1
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 2.5e-08 63.5 122 28.7
AUR62025505 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.2e-08 63.2 97 32.0
arahy.Tifrunner.gnm1.ann1.MLQS0T Arachis hypogaea HOM05D010233 ORTHO05D010881 4.2e-08 62.8 105 29.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.2e-08 62.8 120 27.5
FAN13G2291 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.2e-08 62.8 143 28.0
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 5.5e-08 62.4 117 31.6
Rhsim01G0228300 Rhododendron simsii HOM05D000537 ORTHO05D000415 5.5e-08 62.4 91 37.4
Hma1.2p1_0381F.1_g139960 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 1.2e-07 61.2 70 37.1
Rhsim10G0108400 Rhododendron simsii HOM05D009719 ORTHO05D011041 1.2e-07 61.2 158 25.3
Rhsim09G0059600 Rhododendron simsii HOM05D009719 ORTHO05D011041 1.6e-07 60.8 105 32.4
arahy.Tifrunner.gnm1.ann1.XV2F0B Arachis hypogaea HOM05D010233 ORTHO05D010881 2.1e-07 60.5 105 29.5
FAN20G2217 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.1e-07 60.5 118 25.4
arahy.Tifrunner.gnm1.ann1.YJDD6D Arachis hypogaea HOM05D010233 ORTHO05D010881 2.7e-07 60.1 105 28.6
RhsimUnG0114800 Rhododendron simsii HOM05D009719 ORTHO05D011041 2.7e-07 60.1 99 30.3
arahy.Tifrunner.gnm1.ann1.1CH4PB Arachis hypogaea HOM05D010233 ORTHO05D010881 3.6e-07 59.7 105 28.6
Ciclev10023350m.g Citrus clementina HOM05D004096 ORTHO05D000898 3.6e-07 59.7 106 26.4
CANSAT64G2369 Cannabis sativa HOM05D014696 ORTHO05D022147 6.1e-07 58.9 120 26.7
arahy.Tifrunner.gnm1.ann1.PZPM74 Arachis hypogaea HOM05D010233 ORTHO05D010881 8.0e-07 58.5 105 27.6
arahy.Tifrunner.gnm1.ann1.W9E7KA Arachis hypogaea HOM05D010233 ORTHO05D010881 8.0e-07 58.5 105 28.6
EL10Ac6g14284 Beta vulgaris HOM05D001399 ORTHO05D009883 8.0e-07 58.5 168 23.8
FAN05G1382 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.0e-07 58.5 115 26.1
FAN16G2434 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.0e-07 58.5 115 26.1
FAN22G0991 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.0e-07 58.5 115 26.1
FAN25G0030 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.0e-07 58.5 115 26.1
vmacro22169 Vaccinium macrocarpon HOM05D011426 ORTHO05D011041 1.0e-06 58.2 102 32.4
arahy.Tifrunner.gnm1.ann1.PTJ2V9 Arachis hypogaea HOM05D008486 ORTHO05D010657 1.8e-06 57.4 96 28.1
Atru.chr10.1446 Acer truncatum HOM05D004096 ORTHO05D000898 2.3e-06 57.0 68 35.3
vmacro10800 Vaccinium macrocarpon HOM05D011426 ORTHO05D011041 5.2e-06 55.8 79 35.4
AUR62038700 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.7e-06 55.5 109 25.7


User provided reference genes

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