Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 6.9e-105 384.0 200 100.0
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.9e-78 296.2 200 81.0
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 2.5e-78 295.8 201 82.1
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 7.9e-77 290.8 201 80.6
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.8e-74 281.6 201 78.1
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 2.6e-72 275.8 211 74.4
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.9e-70 269.6 207 75.4
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 7.2e-70 267.7 203 71.9
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.6e-69 266.5 202 72.8
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 2.7e-69 265.8 208 73.1
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.4e-68 263.5 208 72.6
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 5.2e-68 261.5 207 72.0
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 8.8e-68 260.8 203 74.9
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 4.4e-67 258.5 210 74.3
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.7e-66 256.5 210 73.3
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 2.2e-66 256.1 204 71.6
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 2.2e-66 256.1 209 70.3
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 4.8e-66 255.0 207 72.5
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 6.3e-66 254.6 203 72.9
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.8e-65 253.1 203 72.4
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 2.4e-65 252.7 200 70.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 3.1e-65 252.3 210 71.9
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 3.1e-65 252.3 200 72.0
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 4.1e-65 251.9 207 71.0
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 1.6e-64 250.0 200 70.0
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.0e-64 249.6 204 70.6
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 2.0e-64 249.6 188 72.9
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 2.6e-64 249.2 200 71.5
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 5.9e-64 248.1 165 78.8
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 7.7e-64 247.7 201 71.1
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.0e-63 247.3 211 67.3
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.3e-63 246.9 194 72.2
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.7e-63 246.5 201 71.6
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 2.2e-63 246.1 165 79.4
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 2.2e-63 246.1 214 69.2
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 5.0e-63 245.0 198 70.7
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 5.0e-63 245.0 201 69.7
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.5e-62 242.7 209 70.8
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.2e-62 241.9 202 69.3
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 7.2e-62 241.1 214 67.8
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 9.4e-62 240.7 201 69.7
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 9.4e-62 240.7 208 70.2
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.2e-61 240.4 207 69.6
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.2e-61 240.4 207 69.6
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 2.1e-61 239.6 201 68.2
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 2.1e-61 239.6 204 69.6
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.1e-61 239.6 206 69.9
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.1e-61 239.6 207 68.6
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.1e-61 239.6 209 69.4
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.7e-61 239.2 207 69.1
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.1e-61 238.0 207 69.1
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 8.0e-61 237.7 202 68.3
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.8e-60 236.5 203 66.5
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 4.0e-60 235.3 203 69.5
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 4.0e-60 235.3 218 65.1
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.2e-60 235.0 203 68.0
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 6.7e-60 234.6 204 67.2
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 8.8e-60 234.2 204 68.6
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 8.8e-60 234.2 204 68.6
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 8.8e-60 234.2 204 68.6
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.2e-59 233.8 204 68.6
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-59 233.4 203 69.5
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 2.0e-59 233.0 184 72.3
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 2.6e-59 232.6 209 66.0
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 2.6e-59 232.6 208 69.7
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 2.6e-59 232.6 208 69.7
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 2.6e-59 232.6 202 67.3
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.3e-59 232.3 209 66.0
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 3.3e-59 232.3 202 70.3
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 3.3e-59 232.3 208 70.2
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 3.3e-59 232.3 211 66.8
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 4.4e-59 231.9 212 66.5
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 5.7e-59 231.5 209 66.0
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 5.7e-59 231.5 205 67.8
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 5.7e-59 231.5 210 67.1
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 5.7e-59 231.5 203 67.5
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 7.5e-59 231.1 207 66.7
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 7.5e-59 231.1 206 66.5
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 9.7e-59 230.7 207 70.0
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.3e-58 230.3 205 69.8
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.3e-58 230.3 199 67.3
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.7e-58 229.9 206 66.5
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.8e-58 229.2 200 66.0
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 2.8e-58 229.2 161 74.5
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.8e-58 229.2 211 65.9
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 2.8e-58 229.2 203 67.0
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 3.7e-58 228.8 203 69.0
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 3.7e-58 228.8 204 70.1
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 4.8e-58 228.4 203 68.5
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 4.8e-58 228.4 203 68.5
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 4.8e-58 228.4 206 68.0
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 6.3e-58 228.0 207 69.1
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 8.2e-58 227.6 201 68.2
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.1e-57 227.3 205 66.8
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-57 226.9 208 66.3
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.4e-57 226.9 208 66.3
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.4e-57 226.9 206 65.0
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.4e-57 226.9 209 62.7
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.4e-57 226.9 206 66.5
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.8e-57 226.5 203 66.0
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.8e-57 226.5 204 68.1
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.4e-57 226.1 206 65.0
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.1e-57 225.7 207 67.6
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.1e-57 225.7 206 64.6
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 4.1e-57 225.3 117 94.9
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 4.1e-57 225.3 180 69.4
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 2.0e-56 223.0 205 67.3
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 3.5e-56 222.2 202 67.3
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 4.5e-56 221.9 202 66.3
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 7.7e-56 221.1 202 66.3
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 1.3e-55 220.3 204 64.2
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.7e-55 219.9 209 67.0
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.7e-55 219.9 200 64.5
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 3.8e-55 218.8 207 64.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.8e-55 218.8 202 65.3
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.8e-55 218.8 202 65.3
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 3.8e-55 218.8 154 76.6
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 5.0e-55 218.4 200 65.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.0e-55 218.4 202 64.9
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.1e-54 217.2 200 60.5
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.9e-54 216.5 202 63.4
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 2.5e-54 216.1 111 94.6
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.4e-52 210.3 203 63.5
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 3.0e-52 209.1 104 99.0
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.2e-51 207.2 104 98.1
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 2.0e-51 206.5 202 61.9
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.0e-51 206.5 104 96.2
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 2.6e-51 206.1 104 97.1
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 7.5e-51 204.5 179 65.9
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 2.4e-49 199.5 110 90.9
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 3.1e-49 199.1 162 66.0
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 4.1e-49 198.7 104 93.3
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 5.4e-49 198.4 198 61.6
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 7.0e-49 198.0 201 58.7
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 3.8e-47 192.2 193 58.5
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 7.2e-46 188.0 103 92.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 1.2e-45 187.2 100 90.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 7.5e-43 177.9 126 70.6
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.2e-40 170.6 121 69.4
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.0e-40 169.9 195 51.3
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.7e-40 169.5 202 54.0
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 5.9e-40 168.3 100 79.0
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.1e-37 159.8 117 68.4
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 2.8e-37 159.5 155 58.7
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 3.4e-35 152.5 101 69.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.3e-31 140.6 102 63.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 4.3e-30 135.6 99 64.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.3e-23 114.0 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 4.7e-21 105.5 119 45.4
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.3e-18 97.4 202 38.6
TAR628G0060 Trochodendron aralioides HOM05D001946 ORTHO05D002111 4.6e-08 62.4 114 32.5
RcHm_v2.0_Chr4g0438311 Rosa chinensis HOM05D001946 ORTHO05D002111 5.1e-07 58.9 113 32.7
FvH4_4g30020 Fragaria vesca HOM05D001946 ORTHO05D002111 1.1e-06 57.8 116 31.0
FAN07G0629 Fragaria x ananassa HOM05D001946 ORTHO05D002111 1.1e-06 57.8 116 31.0
FAN12G4109 Fragaria x ananassa HOM05D001946 ORTHO05D002111 1.1e-06 57.8 116 31.0
PGR142G3371 Punica granatum HOM05D001946 ORTHO05D002111 1.9e-06 57.0 99 34.3
Phvul.002G051100 Phaseolus vulgaris HOM05D001946 ORTHO05D002111 2.5e-06 56.6 99 34.3
CsaV3_3G016300 Cucumis sativus L. HOM05D001946 ORTHO05D002111 4.3e-06 55.8 99 33.3
Sed0002655 Sechium edule HOM05D001946 ORTHO05D002111 4.3e-06 55.8 99 34.3
Sed0011452 Sechium edule HOM05D001946 ORTHO05D002111 4.3e-06 55.8 99 34.3
Sed0017760 Sechium edule HOM05D001946 ORTHO05D002111 4.3e-06 55.8 99 34.3
Sed0022101 Sechium edule HOM05D001946 ORTHO05D002111 4.3e-06 55.8 99 34.3
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.6e-06 55.5 106 30.2
Aqoxy6G01796 Aquilegia oxysepala HOM05D001946 ORTHO05D002111 5.6e-06 55.5 114 28.9
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 7.3e-06 55.1 114 29.8
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 9.6e-06 54.7 99 34.3


User provided reference genes

Program Settings