Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025837 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 2.4e-104 382.1 185 100.0
CSS0038543 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D000381 6.7e-46 188.0 112 83.0
CSS0001421 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 1.1e-45 187.2 114 78.1
CSS0027250 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.9e-42 174.9 93 90.3
CSS0013778 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 8.5e-41 171.0 129 68.2
CSS0024894 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 6.1e-39 164.9 96 84.4
CSS0027277 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.0e-38 164.1 93 83.9
CSS0024494 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.7e-38 161.4 85 88.2
CSS0017001 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.8e-35 153.3 87 82.8
CSS0025084 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.4e-35 152.9 81 88.9
CSS0005043 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.0e-30 137.5 100 71.0
CSS0025884 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.2e-24 115.9 93 64.5
CSS0034424 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.1e-19 100.9 75 68.0
CSS0017771 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-17 94.0 90 55.6
CSS0005092 Camellia sinensis var. sinensis HOM05D025243 ORTHO05D000381 1.7e-17 93.6 64 79.7
CSS0018430 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.6e-15 87.0 52 82.7
CSS0039307 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.0e-14 82.4 78 61.5
CSS0044971 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.2e-14 82.0 45 84.4
CSS0028719 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.6e-13 79.7 78 65.4
CSS0029650 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 1.1e-11 74.3 64 60.9
CSS0032270 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 1.1e-11 74.3 64 64.1
CSS0023060 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 1.4e-11 73.9 66 62.1
CSS0010660 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 7.0e-11 71.6 87 51.7
SHI33011 Sapria himalayana HOM05D000004 ORTHO05D000002 7.0e-11 71.6 86 43.0
SHI25606 Sapria himalayana HOM05D000004 ORTHO05D004811 1.6e-10 70.5 49 65.3
CSS0019662 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 2.0e-10 70.1 53 67.9
CSS0032364 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.0e-10 70.1 51 64.7
SHI19613 Sapria himalayana HOM05D000004 ORTHO05D004811 4.5e-10 68.9 45 66.7
CSS0048334 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000002 5.9e-10 68.6 37 89.2
SHI05389 Sapria himalayana HOM05D000004 ORTHO05D004811 1.3e-09 67.4 44 68.2
FvH4_4g16179 Fragaria vesca HOM05D000004 ORTHO05D000002 1.7e-09 67.0 78 52.6
SHI27876 Sapria himalayana HOM05D000004 ORTHO05D004811 2.9e-09 66.2 67 50.7
SHI25103 Sapria himalayana HOM05D000004 ORTHO05D004811 1.5e-08 63.9 45 62.2
SHI16549 Sapria himalayana HOM05D000004 ORTHO05D004811 1.9e-08 63.5 66 45.5
SHI18854 Sapria himalayana HOM05D000004 ORTHO05D004811 1.9e-08 63.5 45 64.4
SHI32057 Sapria himalayana HOM05D000004 ORTHO05D004811 2.5e-08 63.2 45 64.4
CSS0006192 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.2e-08 62.8 29 96.6
SHI14655 Sapria himalayana HOM05D000004 ORTHO05D000002 3.2e-08 62.8 45 62.2
CSS0048183 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-08 62.4 44 70.5
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 4.2e-08 62.4 73 47.9
SHI32289 Sapria himalayana HOM05D000004 ORTHO05D004811 5.5e-08 62.0 52 51.9
SHI36385 Sapria himalayana HOM05D000004 ORTHO05D000002 5.5e-08 62.0 45 62.2
RcHm_v2.0_Chr7g0221891 Rosa chinensis HOM05D000004 ORTHO05D000002 9.5e-08 61.2 45 66.7
CSS0020929 Camellia sinensis var. sinensis HOM05D003392 ORTHO05D003801 1.2e-07 60.8 45 66.7
CSS0000004 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-07 60.5 31 83.9
CSS0021557 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.6e-07 60.5 53 54.7
CSS0046839 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.6e-07 60.5 53 54.7
FvH4_4g10361 Fragaria vesca HOM05D000004 ORTHO05D000002 1.6e-07 60.5 45 64.4
FvH4_4g15583 Fragaria vesca HOM05D000004 ORTHO05D000002 1.6e-07 60.5 45 64.4
SHI00949 Sapria himalayana HOM05D000004 ORTHO05D000002 1.6e-07 60.5 85 41.2
SHI25972 Sapria himalayana HOM05D000004 ORTHO05D004811 1.6e-07 60.5 45 62.2
SHI33814 Sapria himalayana HOM05D000004 ORTHO05D004811 1.6e-07 60.5 48 62.5
SHI07826 Sapria himalayana HOM05D000004 ORTHO05D004811 2.1e-07 60.1 48 60.4
SHI22160 Sapria himalayana HOM05D000004 ORTHO05D004811 2.1e-07 60.1 67 49.3
SHI23115 Sapria himalayana HOM05D000004 ORTHO05D000002 2.1e-07 60.1 45 57.8
CSS0020671 Camellia sinensis var. sinensis HOM05D025243 ORTHO05D112781 3.6e-07 59.3 78 50.0
SHI10860 Sapria himalayana HOM05D000004 ORTHO05D000002 3.6e-07 59.3 43 60.5
Sopen07g020700 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 59.3 54 55.6
CSS0003101 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.7e-07 58.9 45 57.8
CSS0019890 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.7e-07 58.9 45 57.8
CSS0022166 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.7e-07 58.9 53 52.8
CSS0047776 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.7e-07 58.9 45 57.8
Ca_27984_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 6.1e-07 58.5 53 56.6
SHI27362 Sapria himalayana HOM05D000004 ORTHO05D004811 6.1e-07 58.5 38 68.4
SHI34657 Sapria himalayana HOM05D000004 ORTHO05D004811 6.1e-07 58.5 45 60.0
CSS0021854 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.0e-07 58.2 48 54.2
Ca_23708_v3 Cicer arietinum L. HOM05D000004 ORTHO05D004811 8.0e-07 58.2 63 52.4
SHI04649 Sapria himalayana HOM05D017118 ORTHO05D004811 8.0e-07 58.2 43 60.5
SHI15031 Sapria himalayana HOM05D000004 ORTHO05D000002 8.0e-07 58.2 29 82.8
SHI30959 Sapria himalayana HOM05D000004 ORTHO05D004811 8.0e-07 58.2 32 78.1
CSS0033175 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.0e-06 57.8 45 55.6
CSS0034226 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.0e-06 57.8 45 57.8
FvH4_4g06574 Fragaria vesca HOM05D000004 ORTHO05D000002 1.0e-06 57.8 53 50.9
SHI27815 Sapria himalayana HOM05D000004 ORTHO05D000002 1.0e-06 57.8 29 82.8
Sopen06g012720 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-06 57.8 35 68.6
VMungo0464G0079 Vigna mungo HOM05D000005 ORTHO05D000012 1.0e-06 57.8 31 80.6
CSS0004331 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.4 48 54.2
CSS0006373 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.4 48 54.2
CSS0017123 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.4 45 55.6
CSS0033949 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.4 48 54.2
CSS0038181 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.4 48 54.2
CSS0044817 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.4 48 54.2
Ca_13020_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-06 57.4 29 86.2
Ca_18134_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-06 57.4 53 54.7
Ca_23984_v3 Cicer arietinum L. HOM05D001980 ORTHO05D000016 1.4e-06 57.4 29 86.2
Ca_23986_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-06 57.4 29 86.2
Ca_27626_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-06 57.4 29 86.2
SHI32266 Sapria himalayana HOM05D000004 ORTHO05D004811 1.4e-06 57.4 28 82.1
arahy.Tifrunner.gnm1.ann1.XN38V0 Arachis hypogaea HOM05D000004 ORTHO05D000002 1.8e-06 57.0 53 54.7
CSS0012883 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.8e-06 57.0 48 54.2
Sopen08g015670 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 57.0 35 68.6
Sopen09g010400 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 57.0 35 68.6
arahy.Tifrunner.gnm1.ann1.F5TZD4 Arachis hypogaea HOM05D000004 ORTHO05D000002 2.3e-06 56.6 29 82.8
CSS0000254 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.3e-06 56.6 45 55.6
CSS0031388 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.3e-06 56.6 45 55.6
CSS0047664 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.3e-06 56.6 45 55.6
SHI10948 Sapria himalayana HOM05D000004 ORTHO05D004811 2.3e-06 56.6 39 66.7
SHI30296 Sapria himalayana HOM05D000004 ORTHO05D004811 2.3e-06 56.6 29 79.3
SHI37155 Sapria himalayana HOM05D000004 ORTHO05D000002 2.3e-06 56.6 29 82.8
SHI37172 Sapria himalayana HOM05D000004 ORTHO05D000002 2.3e-06 56.6 29 82.8
Sopen07g018810 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 56.6 35 68.6
Sopen12g020340 Solanum pennellii HOM05D000004 ORTHO05D000034 2.3e-06 56.6 38 60.5
ECA133G0014 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.0e-06 56.2 29 75.9
SHI03955 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-06 56.2 44 56.8
SHI46791 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-06 56.2 44 56.8
SHI48849 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-06 56.2 44 56.8
SHI49963 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-06 56.2 44 56.8
SHI50617 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-06 56.2 44 56.8
SHI52154 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-06 56.2 44 56.8
CSS0014317 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.0e-06 55.8 66 42.4
CSS0021717 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.0e-06 55.8 46 47.8
CSS0025343 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.0e-06 55.8 48 52.1
CANSAT54G1395 Cannabis sativa HOM05D000004 ORTHO05D000002 4.0e-06 55.8 38 60.5
SHI22333 Sapria himalayana HOM05D000004 ORTHO05D000002 4.0e-06 55.8 40 60.0
SHI28365 Sapria himalayana HOM05D000004 ORTHO05D004811 4.0e-06 55.8 32 75.0
Sopen01g027850 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 55.8 35 65.7
Sopen04g023140 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 55.8 35 65.7
Sopen05g014410 Solanum pennellii HOM05D000004 ORTHO05D000034 4.0e-06 55.8 35 68.6
Sopen06g006260 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 55.8 62 45.2
Sopen08g008360 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 55.8 35 68.6
Sopen10g021780 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 55.8 35 68.6
Sopen12g025590 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 55.8 34 67.6
CSS0049213 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.2e-06 55.5 45 53.3
Ca_02441_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.2e-06 55.5 32 75.0
Ca_04624_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.2e-06 55.5 57 52.6
SHI05212 Sapria himalayana HOM05D000004 ORTHO05D000002 5.2e-06 55.5 29 79.3
SHI26041 Sapria himalayana HOM05D000004 ORTHO05D000002 5.2e-06 55.5 67 43.3
SHI29278 Sapria himalayana HOM05D000004 ORTHO05D004811 5.2e-06 55.5 40 57.5
Sopen05g011930 Solanum pennellii HOM05D000004 ORTHO05D000002 5.2e-06 55.5 63 49.2
HanXRQChr07g0204391 Helianthus annuus HOM05D000004 ORTHO05D000002 6.8e-06 55.1 39 56.4
PSO017G4258 Papaver somniferum HOM05D000004 ORTHO05D000002 6.8e-06 55.1 93 39.8
SHI21827 Sapria himalayana HOM05D000004 ORTHO05D004811 6.8e-06 55.1 29 75.9
SHI25204 Sapria himalayana HOM05D017118 ORTHO05D004811 6.8e-06 55.1 40 60.0
SHI25799 Sapria himalayana HOM05D000004 ORTHO05D000002 6.8e-06 55.1 41 63.4
SHI35862 Sapria himalayana HOM05D000004 ORTHO05D000002 6.8e-06 55.1 38 63.2
SHI35869 Sapria himalayana HOM05D000004 ORTHO05D000002 6.8e-06 55.1 38 63.2
SHI36814 Sapria himalayana HOM05D017118 ORTHO05D004811 6.8e-06 55.1 43 58.1
SHI36833 Sapria himalayana HOM05D017118 ORTHO05D004811 6.8e-06 55.1 43 58.1
Sopen05g011520 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 55.1 35 62.9
Sopen05g016800 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 55.1 34 67.6
Sopen10g018100 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 55.1 35 65.7
Sopen10g019760 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 55.1 70 41.4
arahy.Tifrunner.gnm1.ann1.7ESB3K Arachis hypogaea HOM05D000004 ORTHO05D000002 8.8e-06 54.7 53 56.6
arahy.Tifrunner.gnm1.ann1.8BX9LS Arachis hypogaea HOM05D000004 ORTHO05D000002 8.8e-06 54.7 53 56.6
arahy.Tifrunner.gnm1.ann1.SV62YW Arachis hypogaea HOM05D000004 ORTHO05D000002 8.8e-06 54.7 53 56.6
Lj2g0002584 Lotus japonicus HOM05D000004 ORTHO05D000002 8.8e-06 54.7 53 52.8
SHI15364 Sapria himalayana HOM05D000004 ORTHO05D000002 8.8e-06 54.7 43 55.8
SHI22197 Sapria himalayana HOM05D000004 ORTHO05D000002 8.8e-06 54.7 52 55.8
SHI29678 Sapria himalayana HOM05D000004 ORTHO05D000002 8.8e-06 54.7 29 79.3
SHI30966 Sapria himalayana HOM05D000004 ORTHO05D000002 8.8e-06 54.7 44 59.1
SHI34582 Sapria himalayana HOM05D000004 ORTHO05D004811 8.8e-06 54.7 29 75.9
Sopen03g013530 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 54.7 36 63.9
Sopen06g016630 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 54.7 38 60.5
Sopen07g018410 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 54.7 41 58.5
Sopen09g023380 Solanum pennellii HOM05D000004 ORTHO05D000034 8.8e-06 54.7 36 63.9
Sopen12g022150 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 54.7 35 62.9
SGA_v2.0_scaffold420G51366 Striga asiatica HOM05D000004 ORTHO05D000002 8.8e-06 54.7 29 79.3
TWI59G0483 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 8.8e-06 54.7 44 61.4


User provided reference genes

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