Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 2.3e-41 171.8 86 100.0
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 1.0e-12 76.6 38 97.4
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 1.0e-12 76.6 38 97.4
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.0e-12 76.6 38 97.4
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 1.3e-12 76.3 38 94.7
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 1.3e-12 76.3 39 89.7
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 2.3e-12 75.5 38 94.7
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 2.3e-12 75.5 44 84.1
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 2.9e-12 75.1 38 94.7
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 5.0e-12 74.3 38 92.1
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 5.0e-12 74.3 39 87.2
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 6.6e-12 73.9 38 94.7
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 6.6e-12 73.9 40 90.0
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 8.6e-12 73.6 38 92.1
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 8.6e-12 73.6 38 92.1
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 8.6e-12 73.6 38 92.1
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 8.6e-12 73.6 36 97.2
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 8.6e-12 73.6 38 92.1
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 89.5
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 1.1e-11 73.2 39 89.7
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 89.5
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 89.5
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 89.5
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 92.1
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 89.5
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 1.1e-11 73.2 38 89.5
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 1.5e-11 72.8 38 92.1
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 1.5e-11 72.8 38 89.5
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 1.5e-11 72.8 38 89.5
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 2.5e-11 72.0 61 62.3
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 3.3e-11 71.6 65 63.1
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 3.3e-11 71.6 38 92.1
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 4.2e-11 71.2 44 79.5
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 7.2e-11 70.5 38 89.5
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 7.2e-11 70.5 38 89.5
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 7.2e-11 70.5 38 89.5
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 7.2e-11 70.5 38 89.5
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 9.5e-11 70.1 76 53.9
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 9.5e-11 70.1 38 89.5
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 9.5e-11 70.1 38 86.8
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 1.2e-10 69.7 38 89.5
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 89.5
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 86.8
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 1.6e-10 69.3 38 89.5
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.1e-10 68.9 35 94.3
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.1e-10 68.9 38 86.8
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 2.8e-10 68.6 40 82.5
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 2.8e-10 68.6 38 86.8
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.0e-10 67.0 35 91.4
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.0e-10 67.0 35 91.4
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 8.0e-10 67.0 35 91.4
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 1.0e-09 66.6 40 82.5
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 1.0e-09 66.6 40 82.5
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 1.4e-09 66.2 38 84.2
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.8e-09 65.9 38 84.2
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.8e-09 65.9 38 84.2
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 1.8e-09 65.9 38 84.2
AL3G20640 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 2.3e-09 65.5 35 85.7
AT3G09455 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 2.3e-09 65.5 35 85.7
Carub.0003s0856 Capsella rubella HOM05D006953 ORTHO05D008556 2.3e-09 65.5 35 85.7
Thhalv10021844m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 2.3e-09 65.5 35 85.7
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 3.0e-09 65.1 48 70.8
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 3.0e-09 65.1 36 77.8
Mapoly0086s0029 Marchantia polymorpha HOM05D006953 ORTHO05D008556 5.2e-09 64.3 36 83.3
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 6.8e-09 63.9 32 93.8
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 6.8e-09 63.9 35 82.9
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 6.8e-09 63.9 35 82.9
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 6.8e-09 63.9 35 82.9
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 6.8e-09 63.9 35 82.9
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 6.8e-09 63.9 35 82.9
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 6.8e-09 63.9 36 80.6
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 6.8e-09 63.9 35 82.9
CARHR083870 Cardamine hirsuta HOM05D006953 ORTHO05D008556 6.8e-09 63.9 35 82.9
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 1.2e-08 63.2 35 88.6
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 1.2e-08 63.2 38 78.9
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 1.5e-08 62.8 38 78.9
TWI63G1588 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.5e-08 62.8 38 76.3
EL10Ac8g18952 Beta vulgaris HOM05D006953 ORTHO05D008556 2.0e-08 62.4 33 84.8
C04p60710 Brassica napus HOM05D006953 ORTHO05D008556 2.0e-08 62.4 35 80.0
AL6G11750 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 2.6e-08 62.0 35 80.0
AT5G02502 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 3.4e-08 61.6 35 77.1
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 4.4e-08 61.2 38 76.3
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 4.4e-08 61.2 38 76.3
BolC4t27560H Brassica oleracea HOM05D006953 ORTHO05D008556 5.7e-08 60.8 35 77.1
BraA10t45347Z Brassica rapa HOM05D006953 ORTHO05D008556 5.7e-08 60.8 35 77.1
SEGI_27928 Sequoiadendron giganteum HOM05D006953 ORTHO05D008556 7.5e-08 60.5 35 80.0
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 9.8e-08 60.1 38 78.9
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 9.8e-08 60.1 38 78.9
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 9.8e-08 60.1 38 78.9
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 9.8e-08 60.1 38 78.9
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 9.8e-08 60.1 38 78.9
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 1.3e-07 59.7 38 73.7
FAN10G2372 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.7e-07 59.3 38 76.3
FAN01G1395 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.2e-07 58.9 43 69.8
FAN01G2049 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.2e-07 58.9 43 69.8
FAN06G2124 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.2e-07 58.9 43 69.8
FAN06G2412 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.2e-07 58.9 43 69.8
RcHm_v2.0_Chr1g0366451 Rosa chinensis HOM05D006953 ORTHO05D008556 2.8e-07 58.5 39 71.8
CANSAT35G0750 Cannabis sativa HOM05D006953 ORTHO05D008556 3.7e-07 58.2 38 76.3
FAN03G0258 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.7e-07 58.2 38 73.7
MD07G1195400 Malus domestica HOM05D006953 ORTHO05D008556 4.9e-07 57.8 38 76.3
ECA232G3005 Erigeron canadensis HOM05D006953 ORTHO05D008556 8.3e-07 57.0 35 80.0
Pp3c21_16500 Physcomitrium patens HOM05D006953 ORTHO05D008556 8.3e-07 57.0 38 68.4
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 1.4e-06 56.2 38 73.7
BraA09t36404Z Brassica rapa HOM05D006953 ORTHO05D008556 3.1e-06 55.1 30 83.3
arahy.Tifrunner.gnm1.ann1.NJI399 Arachis hypogaea HOM05D000548 ORTHO05D000987 7.0e-06 53.9 31 87.1
Phvul.006G203200 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 7.0e-06 53.9 38 73.7


User provided reference genes

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