Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 0.0e+00 1923.7 981 100.0
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1783.5 972 94.3
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1768.8 973 93.3
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1767.3 972 93.1
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 0.0e+00 1752.3 972 91.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1748.0 1023 89.3
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 0.0e+00 1745.3 972 91.5
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 0.0e+00 1744.9 972 91.5
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 0.0e+00 1739.9 971 91.3
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 0.0e+00 1736.9 972 90.9
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 0.0e+00 1735.7 972 91.6
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 0.0e+00 1735.7 972 91.2
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 0.0e+00 1734.9 972 90.9
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 0.0e+00 1733.8 972 90.6
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 0.0e+00 1733.4 972 90.9
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1733.0 972 90.6
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 0.0e+00 1732.6 972 91.4
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 0.0e+00 1732.2 972 90.5
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 0.0e+00 1731.5 972 90.5
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 0.0e+00 1730.7 974 91.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1729.1 972 90.9
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 0.0e+00 1727.6 972 90.2
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1725.7 972 89.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 0.0e+00 1724.9 972 89.6
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 0.0e+00 1722.6 988 89.7
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1718.4 972 89.7
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 0.0e+00 1718.0 972 89.7
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 0.0e+00 1716.0 973 89.9
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1715.3 972 89.9
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 0.0e+00 1714.9 973 90.4
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 0.0e+00 1714.9 1020 86.6
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 0.0e+00 1714.5 972 90.2
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 0.0e+00 1714.5 972 89.3
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1714.1 972 89.8
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1712.6 1001 87.7
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 0.0e+00 1712.6 974 90.1
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 0.0e+00 1711.0 972 89.3
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1710.3 1001 87.5
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 0.0e+00 1709.5 972 89.5
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 0.0e+00 1709.5 972 89.0
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 0.0e+00 1708.3 1014 87.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1706.0 1001 87.5
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 1705.6 993 89.0
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1703.3 972 88.9
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1702.2 972 88.2
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 0.0e+00 1700.6 974 90.0
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 0.0e+00 1700.3 972 88.8
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1698.7 972 89.0
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 0.0e+00 1694.9 972 88.7
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 0.0e+00 1693.7 972 88.9
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 0.0e+00 1684.8 972 88.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 0.0e+00 1679.5 972 87.7
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1679.1 972 88.9
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 0.0e+00 1677.1 972 88.7
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1676.4 972 86.8
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 0.0e+00 1676.0 930 93.7
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 0.0e+00 1673.3 972 87.9
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1672.9 972 86.6
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1668.7 971 87.4
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 0.0e+00 1668.3 972 88.5
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 0.0e+00 1667.9 937 91.5
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1665.2 972 88.0
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 0.0e+00 1664.8 972 88.3
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1664.0 972 86.4
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 0.0e+00 1662.1 972 86.6
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1661.0 978 86.8
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1659.0 973 87.1
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 0.0e+00 1655.6 971 87.0
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 0.0e+00 1655.6 972 88.3
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 0.0e+00 1649.4 981 85.9
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 0.0e+00 1644.8 981 85.7
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 0.0e+00 1644.8 981 85.6
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1644.4 981 85.6
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1642.1 981 85.5
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 0.0e+00 1642.1 981 85.5
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 0.0e+00 1641.3 981 85.6
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 0.0e+00 1640.6 982 85.4
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1639.8 1022 83.1
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1639.4 981 85.4
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 0.0e+00 1639.4 981 85.4
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 0.0e+00 1638.2 981 85.4
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 0.0e+00 1637.5 972 85.9
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1634.4 981 85.1
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 0.0e+00 1617.1 952 87.2
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1606.7 972 83.8
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 0.0e+00 1601.3 981 84.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 0.0e+00 1599.7 972 83.2
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 0.0e+00 1597.0 993 84.6
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 0.0e+00 1593.6 929 89.0
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 0.0e+00 1585.5 905 90.2
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 0.0e+00 1550.0 971 81.8
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 0.0e+00 1526.1 1065 75.9
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1518.8 972 80.5
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1516.1 982 80.1
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 0.0e+00 1508.4 1031 78.7
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 0.0e+00 1468.8 975 78.5
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 0.0e+00 1460.3 972 75.9
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 0.0e+00 1438.7 978 74.8
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 0.0e+00 1318.9 893 74.0
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1291.2 988 67.0
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1276.2 998 66.4
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1272.3 989 65.2
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1264.6 986 66.2
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1262.3 977 66.2
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1227.2 977 64.8
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 1101.7 1014 61.0
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 3.4e-306 1055.0 582 92.6
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.1e-277 960.3 1000 51.4
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.7e-277 958.0 562 87.7
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.8e-276 955.7 576 84.9
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.4e-270 936.8 822 62.3
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.4e-264 916.8 565 83.0
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 7.0e-259 897.9 469 96.6
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 3.5e-242 842.4 500 86.0
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 3.3e-224 782.7 458 86.0
Gohir.D12G176866 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.7e-210 736.5 387 97.2
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 7.1e-203 711.8 430 84.7
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.0e-201 708.0 486 77.8
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 1.5e-189 667.5 471 77.1
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 1.5e-176 624.4 344 91.3
Os03g0328000 Oryza sativa ssp. japonica HOM05D003504 ORTHO05D004006 1.8e-150 537.7 282 96.8
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 5.7e-136 489.6 274 89.8
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.3e-129 467.6 294 79.9
Prupe.3G108400 Prunus persica HOM05D003504 ORTHO05D004006 2.8e-106 391.0 336 67.6
AL727U10010 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.3e-100 372.1 204 95.6
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 8.9e-81 306.2 231 70.6
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.7e-77 294.7 158 91.1
RcHm_v2.0_Chr5g0024381 Rosa chinensis HOM05D003504 ORTHO05D004006 1.3e-58 232.6 126 96.8
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 3.7e-42 177.9 150 64.0
Potri.004G000750 Populus trichocarpa HOM05D003504 ORTHO05D004006 5.3e-41 174.1 99 92.9
AagrBONN_evm.TU.Sc2ySwM_362.1411 Anthoceros agrestis HOM05D003504 ORTHO05D004006 6.9e-41 173.7 666 24.9
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.7e-29 134.4 132 56.8
Lsat_1_v5_gn_3_41440 Lactuca sativa HOM05D003504 ORTHO05D004006 1.4e-25 122.9 97 69.1
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 1.8e-25 122.5 88 68.2
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 2.4e-25 122.1 119 55.5
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 3.1e-25 121.7 180 46.1
Lsat_1_v5_gn_7_41641 Lactuca sativa HOM05D003504 ORTHO05D004006 1.1e-22 113.2 156 48.1
TPR.G38062 Trifolium pratense HOM05D003504 ORTHO05D004006 1.8e-20 105.9 71 77.5
TPR.G35990 Trifolium pratense HOM05D003504 ORTHO05D004006 2.3e-20 105.5 71 76.1
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 1.5e-19 102.8 48 95.8
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.0e-19 102.4 57 84.2
unitig_0.g2295 Utricularia gibba HOM05D003504 ORTHO05D004006 2.6e-19 102.1 72 77.8
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 3.3e-19 101.7 85 58.8
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 8.2e-18 97.1 44 97.7
QL04p085078 Quercus lobata HOM05D003504 ORTHO05D004006 8.2e-18 97.1 46 93.5
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 3.1e-17 95.1 43 97.7
CDE09G0213 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 7.7e-16 90.5 43 88.4
unitig_0.g393 Utricularia gibba HOM05D003504 ORTHO05D004006 1.3e-15 89.7 140 42.9
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 3.2e-14 85.1 133 41.4
CAN.G83.9 Capsicum annuum HOM05D003504 ORTHO05D004006 6.1e-13 80.9 71 59.2
Lsat_1_v5_gn_1_87860 Lactuca sativa HOM05D002142 ORTHO05D001189 2.0e-11 75.9 68 63.2
MCO09G216 Micromonas commoda HOM05D003504 ORTHO05D004006 5.4e-09 67.8 278 24.8
Lsat_1_v5_gn_5_53440 Lactuca sativa HOM05D003504 ORTHO05D004006 7.0e-09 67.4 62 62.9
Psat6g175760 Pisum sativum HOM05D001676 ORTHO05D001539 3.5e-08 65.1 41 78.0
QL04p085886 Quercus lobata HOM05D003504 ORTHO05D004006 1.7e-07 62.8 68 52.9
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 2.3e-07 62.4 32 84.4


User provided reference genes

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