Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.1e-251 870.9 437 100.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.5e-208 728.8 436 84.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.2e-206 721.1 434 83.4
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.4e-205 718.0 434 83.2
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.1e-203 711.4 462 79.4
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.1e-200 703.4 440 80.9
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 9.5e-192 673.7 435 77.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 9.5e-192 673.7 434 78.1
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.3e-190 669.1 434 77.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.4e-189 664.8 436 76.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.8e-189 663.7 434 77.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.1e-187 660.2 465 73.3
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.4e-187 659.1 434 75.8
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.4e-187 659.1 408 80.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.3e-185 652.5 430 75.8
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 8.6e-185 650.6 434 75.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 5.6e-184 647.9 434 75.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.1e-183 646.0 435 74.5
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.4e-182 643.3 436 73.6
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 8.9e-182 640.6 436 72.5
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.5e-181 639.8 436 73.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 9.9e-181 637.1 435 74.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.7e-180 636.3 433 74.1
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 4.9e-180 634.8 444 72.7
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 8.3e-180 634.0 436 71.1
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 5.4e-179 631.3 430 73.3
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.6e-178 629.8 430 72.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.1e-178 629.4 437 72.3
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.1e-178 629.4 437 72.5
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 3.5e-178 628.6 430 73.7
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.5e-178 628.6 430 73.7
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 4.6e-178 628.2 432 73.4
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.9e-177 625.2 437 71.9
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 5.1e-177 624.8 435 73.8
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 8.6e-177 624.0 433 73.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.1e-176 623.6 437 71.6
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.1e-176 623.6 433 73.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.5e-176 622.5 430 71.9
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.3e-176 622.1 433 73.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.3e-176 622.1 431 72.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 3.3e-176 622.1 431 72.9
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 7.3e-176 620.9 436 70.6
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.2e-175 620.2 431 72.6
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.8e-175 619.0 433 72.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 8.1e-175 617.5 430 71.2
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.4e-174 615.9 433 73.4
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.1e-174 615.5 433 70.2
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.2e-174 614.8 433 72.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.8e-174 614.4 430 71.9
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 8.9e-174 614.0 449 69.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.6e-173 612.5 390 78.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.6e-173 612.5 433 72.7
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.9e-172 608.2 436 68.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.1e-171 607.1 433 72.1
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 7.1e-171 604.4 436 69.0
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 9.2e-171 604.0 430 69.8
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.2e-170 603.6 435 70.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.2e-170 603.6 416 76.0
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 3.9e-169 598.6 439 69.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-167 593.6 387 77.5
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.5e-165 586.6 435 72.6
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-164 583.2 435 70.8
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 8.4e-164 580.9 450 65.3
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 7.1e-163 577.8 449 65.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.1e-162 576.2 400 72.2
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.1e-162 576.2 400 72.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.5e-160 570.1 474 66.2
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.5e-160 570.1 444 66.0
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.9e-160 569.7 435 65.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 3.3e-160 568.9 436 67.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 6.2e-159 564.7 397 70.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.4e-158 562.8 400 72.0
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 3.1e-158 562.4 437 67.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.3e-158 561.6 439 67.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 9.0e-158 560.8 431 64.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.9e-156 555.1 307 88.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.1e-155 553.9 435 62.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 7.1e-155 551.2 440 65.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 4.6e-154 548.5 402 72.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.8e-153 546.6 438 61.4
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 8.7e-153 544.3 431 62.9
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-152 543.9 351 78.3
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.9e-152 543.1 435 66.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 7.4e-152 541.2 435 66.4
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.3e-151 540.4 434 60.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.3e-151 540.4 445 61.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.7e-151 538.9 458 59.0
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.7e-151 538.9 447 61.1
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.8e-151 538.5 438 66.7
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.1e-151 537.7 382 73.0
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.8e-150 536.6 436 63.3
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 3.1e-150 535.8 435 65.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 4.0e-150 535.4 451 60.3
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 5.3e-150 535.0 452 60.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 9.0e-150 534.3 389 67.6
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.0e-148 530.8 442 61.8
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 6.4e-148 528.1 457 59.3
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.1e-147 527.3 434 62.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.2e-147 525.8 457 59.1
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 7.1e-147 524.6 421 63.2
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.3e-145 520.4 433 61.2
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 7.4e-144 514.6 383 65.8
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 2.1e-143 513.1 319 79.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 8.2e-143 511.1 373 69.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 5.3e-142 508.4 394 66.0
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 5.3e-142 508.4 394 66.0
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 4.9e-140 501.9 299 82.9
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.4e-140 501.1 394 64.7
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 7.1e-139 498.0 344 73.8
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.5e-136 489.6 438 58.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.3e-136 489.2 433 58.9
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 7.7e-133 478.0 429 60.4
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.0e-132 475.3 433 57.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-130 470.3 426 56.6
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.7e-130 469.5 386 63.2
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.4e-125 452.6 440 56.6
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 5.5e-123 445.3 434 56.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.7e-121 438.3 349 64.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.1e-118 429.5 329 65.7
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.2e-105 385.6 279 67.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.2e-103 380.2 322 63.0
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.1e-102 376.3 279 66.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 4.1e-102 375.9 279 65.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.3e-100 370.9 279 65.6
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 5.0e-100 369.0 277 68.2
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.3e-95 354.4 351 54.1
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.3e-95 354.4 279 62.7
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 4.5e-93 345.9 435 48.5
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 4.2e-91 339.3 292 57.9
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.0e-88 330.5 323 52.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 3.4e-88 329.7 230 67.4
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.6e-82 310.8 367 48.2
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.5e-75 287.7 198 68.7
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 9.5e-75 285.0 157 91.7
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-74 284.6 177 81.9
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.8e-74 283.5 156 91.0
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.1e-73 281.6 155 91.6
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 8.9e-73 278.5 157 90.4
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 3.2e-70 270.0 178 78.1
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.5e-69 266.5 145 93.1
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 5.1e-68 262.7 162 73.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.3e-67 260.0 510 37.8
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 9.5e-67 258.5 277 49.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 9.2e-62 241.9 141 86.5
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.1e-61 240.7 231 56.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.3e-60 238.0 133 91.7
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.1e-57 228.4 184 65.8
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 5.2e-57 226.1 182 65.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.2e-53 214.9 124 87.9
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.5e-51 208.0 154 62.3
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.6e-50 203.4 307 44.0
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-48 197.2 132 81.1
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.9e-46 191.0 464 32.3
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.3e-42 178.3 99 91.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 3.4e-40 170.2 178 56.2
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 7.6e-40 169.1 106 80.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 4.6e-37 159.8 129 62.0
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 6.5e-31 139.4 146 54.1
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.2e-29 135.2 121 61.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.8e-25 121.3 99 63.6
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 5.9e-24 116.3 215 36.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-22 112.1 68 85.3
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.3e-20 104.4 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.0e-20 104.0 56 96.4
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.2e-15 87.8 257 30.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.4e-14 82.4 69 60.9
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 6.1e-13 79.7 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 6.9e-09 66.2 68 44.1
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 3.2e-06 57.4 71 46.5
BraA07t29344Z Brassica rapa HOM05D004012 ORTHO05D004752 5.5e-06 56.6 50 50.0


User provided reference genes

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