Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025679 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 3.7e-199 698.0 344 100.0
CSS0042344 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.8e-108 396.7 374 60.2
CSS0018658 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 3.1e-105 386.0 370 57.0
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 7.2e-102 374.8 376 55.6
CSS0017101 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 5.7e-99 365.2 328 61.6
CSS0016458 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.0e-24 115.9 133 44.4
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.6e-21 107.8 146 44.5
Actinidia07483 Actinidia chinensis HOM05D011882 ORTHO05D011057 3.6e-21 106.7 106 46.2
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 3.6e-21 106.7 96 51.0
CSS0000959 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.0e-19 100.9 80 62.5
CSS0043342 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 2.9e-18 97.1 128 39.8
CSS0047350 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.1e-16 90.9 78 56.4
CSS0010468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D011057 2.1e-13 80.9 313 28.8
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.4e-12 77.4 125 33.6
CSS0023562 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D011057 5.3e-12 76.3 149 30.9
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-11 75.1 98 37.8
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.0e-11 74.3 153 31.4
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 4.5e-11 73.2 112 38.4
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.8e-11 72.8 98 37.8
Rhsim09G0042800 Rhododendron simsii HOM05D017214 ORTHO05D018100 5.8e-11 72.8 89 41.6
vmacro12730 Vaccinium macrocarpon HOM05D002015 ORTHO05D011057 7.6e-11 72.4 83 42.2
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 1.0e-10 72.0 111 32.4
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 1.0e-10 72.0 102 39.2
CSS0020104 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 2.2e-10 70.9 70 50.0
Rhsim10G0189500 Rhododendron simsii HOM05D019536 ORTHO05D011057 3.8e-10 70.1 100 37.0
CSS0001491 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 4.9e-10 69.7 51 60.8
Actinidia24024 Actinidia chinensis HOM05D023450 ORTHO05D023249 8.4e-10 68.9 104 34.6
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 8.4e-10 68.9 75 46.7
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 8.4e-10 68.9 107 39.3
Rhsim03G0015400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.5e-09 67.4 115 38.3
CSS0047841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 3.2e-09 67.0 114 35.1
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 4.2e-09 66.6 95 35.8
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 5.5e-09 66.2 111 33.3
Nitab4.5_0009977g0010 Nicotiana tabacum HOM05D003264 ORTHO05D003276 5.5e-09 66.2 105 40.0
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 7.1e-09 65.9 141 31.2
vmacro17834 Vaccinium macrocarpon HOM05D000412 ORTHO05D002774 9.3e-09 65.5 85 36.5
CSS0020841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.2e-08 65.1 114 35.1
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-08 64.7 170 27.1
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 2.1e-08 64.3 95 35.8
Actinidia04023 Actinidia chinensis HOM05D012898 ORTHO05D011057 4.6e-08 63.2 129 31.8
Oeu012922.1 Olea europaea HOM05D003264 ORTHO05D003276 6.0e-08 62.8 91 39.6
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 6.0e-08 62.8 68 44.1
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 6.0e-08 62.8 68 44.1
CSS0021702 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.3e-07 61.6 104 33.7
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-07 61.6 215 29.3
Cpa.g.sc2511.2 Carica papaya HOM05D003264 ORTHO05D003276 2.3e-07 60.8 87 37.9
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.3e-07 60.8 87 37.9
Solyc04g074040.3 Solanum lycopersicum HOM05D003264 ORTHO05D003276 3.0e-07 60.5 87 40.2
Sopen04g029250 Solanum pennellii HOM05D003264 ORTHO05D003276 3.0e-07 60.5 87 40.2
PGSC0003DMG400017719 Solanum tuberosum HOM05D003264 ORTHO05D003276 3.0e-07 60.5 87 40.2
Cc10_g07270 Coffea canephora HOM05D003264 ORTHO05D003276 3.9e-07 60.1 90 37.8
MSTRG.22152 Avicennia marina HOM05D003264 ORTHO05D003276 6.7e-07 59.3 87 39.1
MD08G1182200 Malus domestica HOM05D003264 ORTHO05D003276 6.7e-07 59.3 87 39.1
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 6.7e-07 59.3 150 28.7
SGA_v2.0_scaffold104G30078 Striga asiatica HOM05D003264 ORTHO05D003276 6.7e-07 59.3 87 39.1
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 6.7e-07 59.3 139 33.1
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 8.7e-07 58.9 205 27.8
Prupe.1G516100 Prunus persica HOM05D003264 ORTHO05D003276 8.7e-07 58.9 95 35.8
Rhsim10G0184600 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.7e-07 58.9 81 37.0
Rhsim12G0132400 Rhododendron simsii HOM05D011882 ORTHO05D011057 8.7e-07 58.9 89 39.3
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.7e-07 58.9 81 37.0
MSTRG.24461 Avicennia marina HOM05D003264 ORTHO05D003276 1.1e-06 58.5 87 39.1
MD15G1367900 Malus domestica HOM05D003264 ORTHO05D003276 1.1e-06 58.5 87 39.1
RcHm_v2.0_Chr7g0239081 Rosa chinensis HOM05D003264 ORTHO05D003276 1.1e-06 58.5 95 35.8
Gohir.A06G194460 Gossypium hirsutum HOM05D000003 ORTHO05D015081 1.5e-06 58.2 152 28.9
Rhsim02G0133000 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-06 58.2 68 38.2
AUR62018901 Chenopodium quinoa HOM05D003264 ORTHO05D003276 1.9e-06 57.8 87 37.9
AUR62027748 Chenopodium quinoa HOM05D003264 ORTHO05D003276 1.9e-06 57.8 87 37.9
Rhsim01G0127900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.9e-06 57.8 69 36.2
Hund16914 Selenicereus undatus HOM05D003264 ORTHO05D003276 1.9e-06 57.8 87 37.9
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 1.9e-06 57.8 90 36.7
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 1.9e-06 57.8 91 38.5
Sed0010987 Sechium edule HOM05D003264 ORTHO05D003276 2.5e-06 57.4 91 36.3
Aa31LG3G17620 Aethionema arabicum HOM05D003264 ORTHO05D003276 3.3e-06 57.0 87 34.5
Sc23g0000200 Simmondsia chinensis HOM05D003264 ORTHO05D003276 3.3e-06 57.0 87 37.9
FvH4_5g37470 Fragaria vesca HOM05D003264 ORTHO05D003276 4.3e-06 56.6 89 37.1
FAN04G2506 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.3e-06 56.6 89 37.1
FAN08G1579 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.3e-06 56.6 89 37.1
FAN13G2489 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.3e-06 56.6 89 37.1
FAN18G2837 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.3e-06 56.6 89 37.1
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.7e-06 56.2 90 37.8
Zm00001eb327870 Zea mays HOM05D003264 ORTHO05D003276 7.4e-06 55.8 105 31.4


User provided reference genes

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