Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 2.8e-67 258.5 130 100.0
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 1.1e-37 160.2 121 66.1
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 8.9e-37 157.1 121 67.8
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.2e-36 156.8 121 66.1
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.0e-36 156.0 121 66.1
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 2.0e-36 156.0 121 65.3
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 1.3e-35 153.3 121 62.8
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.2e-35 152.5 121 66.1
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.9e-35 152.1 121 60.3
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 4.9e-35 151.4 119 63.9
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 8.3e-35 150.6 131 60.3
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.4e-34 149.8 121 62.0
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 2.4e-34 149.1 108 68.5
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 3.2e-34 148.7 126 61.9
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 4.1e-34 148.3 112 67.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 4.1e-34 148.3 124 63.7
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 9.2e-34 147.1 124 60.5
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 4.6e-33 144.8 128 59.4
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 6.0e-33 144.4 134 59.0
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 7.8e-33 144.1 120 57.5
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 1.3e-32 143.3 121 63.6
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 5.1e-32 141.4 128 58.6
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.1e-31 140.2 116 61.2
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 7.3e-31 137.5 129 58.1
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 9.5e-31 137.1 133 54.9
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-30 136.3 121 58.7
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.8e-30 135.6 121 58.7
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.6e-30 135.2 126 56.3
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 3.6e-30 135.2 131 54.2
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 4.7e-30 134.8 121 57.9
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.2e-30 134.4 113 61.9
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 6.2e-30 134.4 121 56.2
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 8.1e-30 134.0 115 60.9
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.1e-30 134.0 115 60.9
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 8.1e-30 134.0 121 56.2
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.8e-29 132.9 120 56.7
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 2.3e-29 132.5 120 60.0
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 5.2e-29 131.3 120 60.0
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 5.2e-29 131.3 113 58.4
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 5.2e-29 131.3 130 50.0
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 6.8e-29 131.0 113 57.5
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 8.9e-29 130.6 111 59.5
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 1.2e-28 130.2 121 54.5
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-28 129.8 128 55.5
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 2.6e-28 129.0 130 56.2
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 2.6e-28 129.0 119 58.0
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.4e-28 128.6 126 54.8
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 3.4e-28 128.6 117 59.0
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 4.4e-28 128.3 121 57.9
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 5.8e-28 127.9 119 53.8
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.8e-28 127.9 130 49.2
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.8e-28 127.9 115 59.1
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 9.9e-28 127.1 121 51.2
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.3e-27 126.7 118 52.5
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.3e-27 126.7 111 53.2
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.3e-27 126.7 130 53.1
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 2.9e-27 125.6 114 53.5
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 3.7e-27 125.2 122 51.6
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 3.7e-27 125.2 111 59.5
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 3.7e-27 125.2 122 51.6
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 4.9e-27 124.8 114 55.3
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 4.9e-27 124.8 130 52.3
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 6.4e-27 124.4 121 56.2
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 1.1e-26 123.6 121 55.4
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.9e-26 122.9 121 53.7
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.9e-26 122.9 111 59.5
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 3.2e-26 122.1 130 43.8
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 4.1e-26 121.7 131 51.1
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 4.1e-26 121.7 111 53.2
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 4.1e-26 121.7 121 56.2
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 4.1e-26 121.7 121 49.6
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 4.1e-26 121.7 121 51.2
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 7.1e-26 120.9 111 55.9
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.2e-25 120.2 121 54.5
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.6e-25 119.8 130 47.7
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 1.6e-25 119.8 111 54.1
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.1e-25 119.4 118 47.5
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 3.5e-25 118.6 119 52.9
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 3.5e-25 118.6 118 51.7
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.6e-25 118.2 118 47.5
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 4.6e-25 118.2 136 45.6
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 4.6e-25 118.2 126 46.8
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.6e-25 118.2 118 49.2
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 6.0e-25 117.9 132 47.7
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.0e-24 117.1 124 50.0
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.0e-24 117.1 127 48.8
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.0e-24 117.1 127 48.8
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.0e-24 117.1 112 55.4
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.0e-24 117.1 124 48.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.7e-24 116.3 122 49.2
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.7e-24 116.3 104 57.7
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 3.0e-24 115.5 126 47.6
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 3.0e-24 115.5 122 50.0
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 8.6e-24 114.0 121 53.7
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 1.1e-23 113.6 141 44.0
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.1e-23 113.6 122 46.7
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.5e-23 113.2 121 47.9
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.9e-23 112.8 118 48.3
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.9e-23 112.8 124 48.4
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 3.3e-23 112.1 122 46.7
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.6e-22 109.8 121 45.5
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 3.6e-22 108.6 133 45.1
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 3.6e-22 108.6 133 45.1
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 6.2e-22 107.8 127 50.4
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 6.2e-22 107.8 120 46.7
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 8.1e-22 107.5 143 42.7
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 1.8e-21 106.3 127 45.7
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.4e-20 101.7 86 62.8
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 5.8e-20 101.3 113 47.8
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 7.6e-20 100.9 111 47.7
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 7.1e-18 94.4 107 50.5
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 9.2e-18 94.0 127 46.5
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 1.2e-17 93.6 72 68.1
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 4.6e-17 91.7 125 40.8
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 1.1e-15 87.0 72 61.1
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 7.3e-15 84.3 72 59.7
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-14 82.4 137 37.2
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 6.2e-14 81.3 78 50.0
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 8.1e-14 80.9 74 52.7
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 3.1e-13 79.0 83 47.0
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 5.3e-13 78.2 97 46.4
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 1.5e-12 76.6 117 41.0
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 7.6e-12 74.3 95 41.1
Lju3590A0T10 Lonicera japonica HOM05D003177 ORTHO05D003481 1.2e-09 67.0 106 42.5
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 1.6e-09 66.6 76 50.0
Eucgr.J00432 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.3e-08 63.5 59 54.2
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 3.0e-08 62.4 70 45.7


User provided reference genes

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