Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 3852.0 1990 100.0
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 3814.6 1990 99.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2893.2 2083 71.2
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2874.7 2074 71.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2856.6 2054 71.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2853.2 2076 70.9
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2569.3 2113 63.6
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2521.1 2081 63.2
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2491.8 2085 62.0
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2476.8 2084 62.1
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2458.7 2093 61.4
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2432.9 2072 60.7
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2432.5 2084 60.7
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2410.9 2079 60.8
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2408.3 2078 60.4
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2407.9 2074 60.2
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2403.6 2072 60.1
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2396.3 2073 60.2
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2394.0 2076 60.4
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2387.8 2072 59.5
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2384.0 2071 59.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2379.7 2076 59.0
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2370.9 2079 58.8
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2366.7 2111 58.0
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2365.5 2079 58.9
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2361.6 2111 58.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2358.2 2111 57.8
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2342.4 2111 57.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2336.6 2078 59.5
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2325.4 2075 57.8
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2321.6 2075 57.8
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2315.8 2075 57.7
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2311.2 2075 57.5
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2303.9 2074 57.8
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2298.1 2074 57.9
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2296.5 2075 58.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2292.7 2072 57.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2284.2 2075 57.2
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2278.4 2075 56.7
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2274.6 2074 57.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2271.1 2060 57.0
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2270.7 2078 57.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2262.6 2077 57.6
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2257.6 1959 59.3
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2253.4 2083 56.6
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2253.0 2076 56.9
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2253.0 1858 62.0
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2237.2 2077 57.0
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2236.1 2113 55.9
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2224.5 2072 56.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2220.3 2077 56.5
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2212.6 2107 56.6
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2204.1 2076 55.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2201.4 2103 56.5
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2194.1 1940 58.8
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2173.7 2070 55.2
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2171.7 2075 54.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2155.6 2109 54.1
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2149.4 2109 54.0
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2145.5 2081 54.5
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2134.0 1987 57.3
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2128.6 2075 54.6
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2122.1 2075 54.7
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2106.3 2067 54.2
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2100.5 1744 62.6
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2099.7 2079 53.9
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2099.3 2068 53.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2066.2 2070 53.1
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2053.5 2073 52.7
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2053.1 1957 54.8
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2051.9 2075 52.8
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2050.0 2084 52.1
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2046.6 2068 52.7
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2020.0 2073 52.4
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2019.2 2073 51.7
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2019.2 2074 52.5
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2018.8 1962 54.4
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2012.7 2072 52.3
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2010.0 1987 53.9
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2009.6 2072 52.0
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2009.2 1960 53.1
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2007.3 2070 52.0
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2000.7 2071 51.1
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1998.0 2093 51.3
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1985.7 2060 51.2
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1956.4 2031 52.1
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1949.9 1959 52.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1842.0 1887 52.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1835.1 2038 49.7
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1792.7 1953 49.1
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1738.4 1527 58.7
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1689.9 1338 62.9
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1662.5 1938 47.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1645.2 1661 52.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1629.4 2009 46.2
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1586.2 1462 57.0
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1562.0 1391 58.4
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1485.7 1384 56.6
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1408.3 1426 54.8
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1328.2 1104 61.8
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1322.8 1104 61.7
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1320.4 1104 61.4
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1229.9 1048 60.0
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1083.9 1059 53.1
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 5.9e-281 972.2 1405 41.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.7e-241 840.5 2055 30.9
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.1e-238 830.9 2065 30.3
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.5e-236 824.7 1492 35.8
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.3e-232 811.6 803 53.4
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 6.0e-225 786.2 2069 28.4
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-204 718.4 823 48.4
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.0e-188 664.8 810 45.4
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.6e-188 664.5 698 52.3
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.8e-176 625.2 662 49.5
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.4e-170 605.5 2092 25.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.8e-168 598.6 770 42.3
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 7.5e-143 513.5 541 50.8
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.2e-119 436.4 320 64.7
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.7e-108 398.7 267 71.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 6.6e-99 367.5 321 61.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.1e-97 362.5 327 54.1
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 6.9e-96 357.5 395 47.1
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 2.8e-81 308.9 426 41.8
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.1e-73 282.7 221 60.6
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-58 232.6 391 38.9
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 5.7e-58 231.5 440 37.7
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 4.8e-57 228.4 150 72.7
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-54 220.3 277 46.2
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.7e-52 212.6 202 60.4
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.7e-51 208.0 274 46.0
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.8e-49 202.6 122 81.1
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 8.5e-46 191.0 153 62.7
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 8.5e-46 191.0 195 54.4
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 5.5e-45 188.3 123 71.5
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.7e-44 185.3 191 57.6
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 7.0e-40 171.4 311 35.7
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 2.9e-38 166.0 122 70.5
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-35 157.5 110 70.9
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.6e-31 143.7 211 40.8
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.5e-31 142.1 98 70.4
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.8e-30 139.0 740 22.3
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.8e-30 139.0 276 33.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.5e-29 137.1 131 52.7
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.5e-29 134.4 101 62.4
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 3.7e-25 122.5 162 42.6
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 3.7e-25 122.5 140 45.7
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 7.8e-23 114.8 194 39.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 7.8e-23 114.8 82 69.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 3.3e-21 109.4 97 54.6
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 7.0e-16 91.7 119 42.9
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 3.5e-15 89.4 76 55.3
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.6e-14 85.1 121 36.4
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.5e-13 84.0 69 60.9
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.5e-13 81.3 90 41.1
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 4.0e-11 75.9 184 29.3
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.0e-11 75.9 72 50.0
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 8.3e-09 68.2 40 82.5
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.7e-07 63.2 42 76.2
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 7.8e-07 61.6 46 63.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 7.8e-07 61.6 46 63.0
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 7.8e-07 61.6 46 63.0


User provided reference genes

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