Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 3.1e-226 788.1 389 100.0
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 6.9e-202 707.2 381 90.0
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.3e-196 688.0 381 88.2
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 6.3e-195 684.1 383 87.2
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.8e-194 682.6 381 87.9
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.7e-192 676.0 380 87.1
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.2e-192 675.6 381 86.6
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 2.9e-192 675.2 380 85.5
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 5.0e-192 674.5 380 85.5
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.4e-191 672.9 380 86.1
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.5e-191 671.0 385 84.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 7.2e-191 670.6 375 85.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.7e-190 668.7 380 86.6
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 7.9e-190 667.2 380 85.0
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.0e-188 662.5 380 83.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.7e-188 661.0 380 83.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.7e-188 661.0 380 83.9
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 9.7e-188 660.2 380 85.8
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.3e-187 659.8 384 84.4
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.7e-187 659.4 380 85.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.8e-187 658.7 381 84.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.8e-187 658.7 380 83.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 4.8e-187 657.9 381 84.3
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.2e-187 657.1 381 84.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 8.2e-187 657.1 383 83.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.1e-186 656.8 380 84.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.4e-186 656.4 381 84.5
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.1e-186 655.2 380 82.6
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 9.1e-186 653.7 381 84.3
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 9.1e-186 653.7 380 82.6
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 9.1e-186 653.7 380 83.7
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.2e-185 653.3 380 82.6
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.5e-185 652.9 383 82.5
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.5e-185 652.9 380 82.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.4e-185 651.7 380 83.7
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.4e-185 651.7 381 83.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.8e-184 648.3 381 83.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 5.0e-184 647.9 382 82.7
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.5e-184 647.5 383 81.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.5e-184 647.5 381 83.5
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 6.5e-184 647.5 381 82.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 8.5e-184 647.1 380 83.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 8.5e-184 647.1 380 83.2
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.1e-183 646.7 380 82.9
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.2e-183 645.2 381 82.4
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 5.5e-183 644.4 381 82.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 9.4e-183 643.7 383 82.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.6e-182 642.9 381 82.2
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.7e-182 642.1 381 82.9
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.7e-182 641.3 392 80.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 6.1e-182 641.0 383 82.2
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 6.1e-182 641.0 380 81.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 7.9e-182 640.6 381 81.9
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-181 639.8 387 81.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.4e-181 639.8 381 81.4
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.8e-181 639.4 385 82.9
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.0e-181 638.6 421 76.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.9e-181 638.3 386 80.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 3.9e-181 638.3 382 82.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.5e-180 636.3 373 82.6
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-180 636.3 383 81.2
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.3e-180 635.2 383 80.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 3.3e-180 635.2 381 81.4
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 7.4e-180 634.0 380 81.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.3e-179 630.9 380 81.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 8.2e-179 630.6 383 79.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.1e-178 630.2 380 81.6
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.4e-178 629.8 414 76.6
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.4e-178 629.0 381 80.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 5.3e-178 627.9 383 78.6
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 7.0e-178 627.5 380 81.8
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.5e-177 626.3 367 83.1
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.5e-177 626.3 380 81.3
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.0e-177 625.9 381 80.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 2.6e-177 625.5 383 79.6
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.5e-177 624.8 383 79.9
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.0e-176 623.6 380 81.1
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.3e-176 623.2 376 80.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.7e-176 622.9 380 81.1
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 5.0e-176 621.3 380 80.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.5e-175 619.0 386 78.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 9.4e-175 617.1 383 79.4
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.2e-174 616.7 381 78.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.6e-174 616.3 381 81.6
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.1e-174 615.9 383 78.3
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-174 615.9 380 78.2
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.1e-174 615.9 384 80.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.7e-174 615.5 384 77.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.7e-174 615.5 383 78.1
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 8.0e-174 614.0 383 78.1
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.0e-173 613.6 383 77.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-173 613.2 381 78.2
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-173 612.8 383 77.8
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.8e-173 612.8 383 77.8
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.8e-173 612.8 380 78.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-173 612.1 381 78.0
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 3.0e-173 612.1 384 77.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 3.0e-173 612.1 384 77.1
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 3.9e-173 611.7 380 79.7
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.2e-173 611.3 384 78.1
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 6.7e-173 610.9 380 78.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.5e-172 609.8 383 76.8
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.6e-172 609.0 383 77.3
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 3.3e-172 608.6 383 77.3
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.4e-172 608.2 380 77.1
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.7e-172 607.8 383 78.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 9.7e-172 607.1 380 77.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 4.1e-170 601.7 381 78.2
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.5e-168 594.0 379 76.8
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 5.5e-167 591.3 408 73.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.6e-166 589.7 379 76.3
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 5.2e-165 584.7 347 82.4
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.2e-163 579.3 379 75.5
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 8.5e-160 567.4 389 72.8
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.9e-159 566.2 345 82.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.0e-157 560.5 371 75.5
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 6.8e-157 557.8 318 82.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 3.4e-156 555.4 381 72.7
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.3e-144 516.9 380 69.5
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 5.0e-144 515.0 380 66.6
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 9.8e-140 500.7 274 89.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 9.5e-135 484.2 266 89.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-130 469.5 378 66.7
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.0e-129 464.9 383 64.8
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.1e-126 454.5 374 66.6
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.3e-125 453.0 368 65.8
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.2e-122 442.6 400 57.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.6e-111 404.4 228 87.7
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.3e-104 383.3 253 72.7
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.7e-97 359.8 423 46.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-97 359.4 313 61.7
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.9e-95 353.6 241 73.0
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 9.6e-95 351.3 274 66.4
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.1e-93 346.3 238 72.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.8e-86 323.2 328 52.7
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.7e-86 322.8 178 89.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.4e-84 316.2 346 51.4
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 5.9e-60 235.7 160 72.5
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.0e-59 235.0 130 86.2
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.2e-59 233.8 370 41.4
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.5e-58 230.3 150 72.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 9.4e-58 228.4 130 84.6
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-53 213.8 130 80.0
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.7e-51 207.6 269 46.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.4e-45 188.0 148 62.2
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 5.4e-45 186.0 186 59.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.0e-43 179.5 125 73.6
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 4.2e-42 176.4 108 75.0
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.2e-41 174.9 136 68.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.1e-41 174.1 107 81.3
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 3.5e-36 156.8 142 57.7
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.9e-35 153.7 163 54.6
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 2.7e-28 130.6 79 77.2
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 3.0e-27 127.1 85 71.8
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.0e-19 100.5 93 58.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.1e-18 98.6 76 64.5
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.1e-17 94.4 48 89.6
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.7e-14 83.6 61 73.8
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.9e-11 73.6 36 88.9
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 5.1e-11 73.2 48 68.8


User provided reference genes

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