Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025334 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 5.5e-22 107.1 68 100.0
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 5.2e-12 73.9 32 93.8
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 2.0e-11 72.0 66 53.0
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 2.0e-11 72.0 72 69.4
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 7.5e-11 70.1 36 75.0
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 7.5e-11 70.1 66 51.5
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 1.7e-10 68.9 60 73.3
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.7e-10 68.9 36 66.7
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 2.2e-10 68.6 33 78.8
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 2.8e-10 68.2 33 75.8
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 4.8e-10 67.4 66 53.0
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 6.3e-10 67.0 33 75.8
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 8.3e-10 66.6 33 69.7
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 8.3e-10 66.6 33 72.7
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 1.1e-09 66.2 33 72.7
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 1.1e-09 66.2 36 66.7
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 1.8e-09 65.5 33 75.8
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 2.4e-09 65.1 33 75.8
MBI18_g17001_MAGBIO Magnolia biondii HOM05D006296 ORTHO05D007777 4.1e-09 64.3 32 78.1
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 5.4e-09 63.9 34 67.6
PGSC0003DMG400022813 Solanum tuberosum HOM05D006296 ORTHO05D007777 7.0e-09 63.5 31 71.0
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 9.1e-09 63.2 32 78.1
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 1.2e-08 62.8 38 71.1
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 1.6e-08 62.4 66 47.0
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.6e-08 62.4 66 47.0
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.6e-08 62.4 66 47.0
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 1.6e-08 62.4 30 76.7
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 2.0e-08 62.0 33 72.7
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 2.0e-08 62.0 66 47.0
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 2.0e-08 62.0 68 44.1
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 2.0e-08 62.0 37 70.3
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 2.0e-08 62.0 66 47.0
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 2.7e-08 61.6 30 76.7
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 3.5e-08 61.2 66 48.5
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 3.5e-08 61.2 32 68.8
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 3.5e-08 61.2 32 68.8
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 3.5e-08 61.2 66 45.5
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 3.5e-08 61.2 29 72.4
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 3.5e-08 61.2 29 72.4
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 4.5e-08 60.8 35 68.6
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 4.5e-08 60.8 33 69.7
Cpa.g.sc27.57 Carica papaya HOM05D006296 ORTHO05D007777 5.9e-08 60.5 37 56.8
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 5.9e-08 60.5 32 68.8
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 5.9e-08 60.5 32 68.8
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 5.9e-08 60.5 37 64.9
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 5.9e-08 60.5 37 64.9
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 1.0e-07 59.7 36 61.1
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 1.3e-07 59.3 31 77.4
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.3e-07 59.3 33 69.7
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 1.7e-07 58.9 67 46.3
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 1.7e-07 58.9 32 68.8
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 2.3e-07 58.5 35 65.7
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 2.3e-07 58.5 33 66.7
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 2.9e-07 58.2 32 71.9
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 2.9e-07 58.2 32 71.9
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 2.9e-07 58.2 39 64.1
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 6.6e-07 57.0 32 68.8
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 6.6e-07 57.0 32 68.8
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 8.6e-07 56.6 32 65.6
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 8.6e-07 56.6 29 75.9
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 8.6e-07 56.6 29 75.9
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 8.6e-07 56.6 29 75.9
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 8.6e-07 56.6 29 75.9
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 8.6e-07 56.6 29 75.9
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 8.6e-07 56.6 31 71.0
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.1e-06 56.2 39 64.1
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 1.9e-06 55.5 35 65.7
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 1.9e-06 55.5 37 62.2
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 2.5e-06 55.1 33 63.6
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 2.5e-06 55.1 29 65.5
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 2.5e-06 55.1 35 65.7
arahy.Tifrunner.gnm1.ann1.W44VBU Arachis hypogaea HOM05D043198 ORTHO05D007777 3.3e-06 54.7 33 60.6
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 3.3e-06 54.7 39 61.5
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 4.2e-06 54.3 36 61.1
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 5.5e-06 53.9 35 65.7
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 5.5e-06 53.9 37 56.8
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 7.2e-06 53.5 36 55.6
C07p51340 Brassica napus HOM05D006296 ORTHO05D007777 9.5e-06 53.1 30 66.7
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 9.5e-06 53.1 29 69.0
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 9.5e-06 53.1 27 70.4
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 9.5e-06 53.1 36 55.6
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 9.5e-06 53.1 32 65.6
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 9.5e-06 53.1 33 57.6


User provided reference genes

Program Settings