Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 6.3e-112 407.9 284 100.0
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.6e-105 386.0 284 97.2
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 8.9e-74 281.2 284 80.3
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.3e-72 277.3 290 76.9
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.7e-72 275.8 284 78.2
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 2.4e-71 273.1 284 76.1
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 1.2e-70 270.8 284 74.3
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.7e-70 269.6 284 77.5
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 3.5e-70 269.2 285 78.2
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 7.8e-70 268.1 284 76.1
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.3e-69 267.3 284 77.5
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.7e-69 266.9 284 75.7
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 2.3e-69 266.5 282 77.3
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 3.9e-69 265.8 285 77.2
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 8.6e-69 264.6 292 71.6
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.1e-68 264.2 284 77.1
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.5e-68 263.8 292 74.0
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.5e-68 263.1 288 76.0
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 9.6e-68 261.2 287 73.9
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 1.6e-67 260.4 292 74.7
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.8e-67 259.6 271 78.2
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 3.6e-67 259.2 285 66.7
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 4.7e-67 258.8 285 75.1
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 6.2e-67 258.5 285 76.1
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 8.1e-67 258.1 289 69.6
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.4e-66 256.5 289 75.1
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 3.1e-66 256.1 220 90.0
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 3.1e-66 256.1 220 90.0
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.1e-66 256.1 321 49.5
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 2.6e-65 253.1 284 75.7
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 5.8e-65 251.9 290 73.1
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 7.6e-65 251.5 219 89.5
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 7.6e-65 251.5 289 73.7
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.7e-64 250.4 289 69.2
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 2.9e-64 249.6 293 74.1
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.1e-63 247.7 294 68.0
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.4e-63 246.5 283 74.2
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 5.4e-63 245.4 286 70.6
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 5.4e-63 245.4 263 62.0
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 7.1e-63 245.0 290 68.3
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 9.3e-63 244.6 287 75.6
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.2e-62 244.2 289 64.7
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.6e-62 243.8 291 69.1
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 3.5e-62 242.7 286 71.7
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 3.5e-62 242.7 222 86.9
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 4.6e-62 242.3 286 70.3
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 4.6e-62 242.3 292 72.9
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 7.8e-62 241.5 293 71.3
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 7.8e-62 241.5 281 62.6
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 1.3e-61 240.7 271 74.9
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 5.1e-61 238.8 285 71.2
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.1e-61 238.8 305 70.2
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.1e-61 238.8 305 70.2
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.1e-60 237.7 293 72.4
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.1e-60 237.7 288 73.3
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.5e-60 237.3 283 73.9
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.5e-60 237.3 287 72.1
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.5e-60 237.3 317 68.5
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.5e-60 236.5 285 72.6
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 3.3e-60 236.1 296 70.3
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 3.3e-60 236.1 284 71.1
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 2.1e-59 233.4 295 71.2
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 2.1e-59 233.4 271 73.8
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.8e-59 233.0 296 69.9
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 3.6e-59 232.6 285 72.3
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 8.1e-59 231.5 297 69.4
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.1e-58 231.1 304 57.9
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.1e-58 231.1 288 71.9
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.4e-58 230.7 286 72.0
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.8e-58 230.3 286 68.5
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 3.1e-58 229.6 296 68.2
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 3.1e-58 229.6 221 82.8
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 6.9e-58 228.4 296 67.9
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 6.9e-58 228.4 295 69.8
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 1.2e-57 227.6 296 67.9
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 5.8e-57 225.3 267 74.5
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.3e-56 224.2 196 88.8
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.8e-56 222.6 285 57.9
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.9e-56 222.2 269 53.9
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 8.4e-56 221.5 215 73.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 2.4e-55 219.9 196 89.8
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.1e-52 211.1 373 42.4
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.9e-52 210.3 239 65.7
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.1e-51 206.8 193 76.7
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.5e-49 200.7 182 84.1
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 3.8e-48 196.1 217 66.8
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 3.2e-47 193.0 208 67.8
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 8.7e-45 184.9 218 72.5
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.5e-41 174.1 232 50.9
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.2e-40 170.2 86 93.0
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 6.5e-40 168.7 88 89.8
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 6.5e-40 168.7 85 92.9
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 4.6e-38 162.5 88 85.2
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 4.6e-38 162.5 88 85.2
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 7.9e-38 161.8 252 46.4
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 3.9e-37 159.5 88 87.5
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 8.7e-37 158.3 85 87.1
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 8.2e-35 151.8 225 74.2
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 1.1e-34 151.4 85 83.5
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.4e-34 150.2 182 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.2e-27 127.1 193 63.7
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 8.2e-27 125.2 98 68.4
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 4.1e-26 122.9 207 71.0
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 2.2e-24 117.1 142 61.3
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 2.9e-24 116.7 133 55.6
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.5e-20 104.4 68 73.5
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 6.9e-18 95.5 59 78.0
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.0e-16 89.4 55 78.2
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 4.7e-14 82.8 45 88.9
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.0e-13 81.6 185 48.1
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 4.1e-10 69.7 94 51.1
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 2.0e-09 67.4 44 70.5
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.2e-08 63.9 54 64.8
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 1.2e-06 58.2 52 53.8


User provided reference genes

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