Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025156 Camellia sinensis var. sinensis HOM05D005233 ORTHO05D006308 5.7e-46 187.2 93 100.0
CSS0036341 Camellia sinensis var. sinensis HOM05D005233 ORTHO05D006308 2.9e-45 184.9 93 98.9
Dinv23373 Davidia involucrata HOM05D005233 ORTHO05D006308 2.2e-29 132.1 91 72.5
vmacro11057 Vaccinium macrocarpon HOM05D005233 ORTHO05D006308 4.9e-29 131.0 92 75.0
Actinidia30278 Actinidia chinensis HOM05D005233 ORTHO05D006308 6.4e-29 130.6 86 76.7
Dinv27906 Davidia involucrata HOM05D005233 ORTHO05D006308 2.7e-27 125.2 87 71.3
Cfa013368 Carpinus fangiana HOM05D005233 ORTHO05D006308 3.0e-26 121.7 83 74.7
Haze_21891 Corylus avellana HOM05D005233 ORTHO05D006308 6.6e-26 120.6 83 73.5
QL05p071834 Quercus lobata HOM05D005233 ORTHO05D006308 6.6e-26 120.6 78 73.1
TAR624G0675 Trochodendron aralioides HOM05D005233 ORTHO05D006308 6.6e-26 120.6 96 66.7
MD15G1092900 Malus domestica HOM05D005233 ORTHO05D006308 1.1e-25 119.8 88 69.3
Hma1.2p1_0049F.1_g028560 Hydrangea macrophylla HOM05D005233 ORTHO05D006308 1.9e-25 119.0 91 67.0
Aqoxy7G03897 Aquilegia oxysepala HOM05D005233 ORTHO05D006308 2.5e-25 118.6 88 68.2
CiPaw.07G203900 Carya illinoinensis HOM05D005233 ORTHO05D006308 3.3e-25 118.2 83 72.3
MBI04_g40323_MAGBIO Magnolia biondii HOM05D005233 ORTHO05D006308 3.3e-25 118.2 94 63.8
Duzib168G1333 Durio zibethinus HOM05D005233 ORTHO05D006308 2.8e-24 115.2 89 64.0
Gohir.D07G025800 Gossypium hirsutum HOM05D005233 ORTHO05D006308 4.7e-24 114.4 90 62.2
Gorai.001G026900 Gossypium raimondii HOM05D005233 ORTHO05D006308 4.7e-24 114.4 90 62.2
GSVIVG01035619001 Vitis vinifera HOM05D005233 ORTHO05D006308 6.2e-24 114.0 91 63.7
CsaV3_2G030830 Cucumis sativus L. HOM05D005233 ORTHO05D006308 8.1e-24 113.6 90 65.6
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.1e-23 113.2 96 61.5
Prupe.1G447800 Prunus persica HOM05D005233 ORTHO05D006308 1.4e-23 112.8 88 67.0
RcHm_v2.0_Chr6g0306381 Rosa chinensis HOM05D005233 ORTHO05D006308 1.4e-23 112.8 87 65.5
Gohir.A07G022400 Gossypium hirsutum HOM05D005233 ORTHO05D006308 1.8e-23 112.5 90 61.1
MELO3C011138.2 Cucumis melo HOM05D005233 ORTHO05D006308 2.3e-23 112.1 91 63.7
FvH4_2g35481 Fragaria vesca HOM05D005233 ORTHO05D006308 3.1e-23 111.7 89 60.7
Sabra18G0044300 Salix brachista HOM05D005233 ORTHO05D006308 3.1e-23 111.7 80 67.5
TWI63G1465 Tripterygium wilfordii HOM05D005233 ORTHO05D006308 6.8e-23 110.5 91 64.8
RcHm_v2.0_Chr6g0306321 Rosa chinensis HOM05D005233 ORTHO05D006308 1.2e-22 109.8 86 64.0
Aa31LG3G15610 Aethionema arabicum HOM05D005233 ORTHO05D006308 1.5e-22 109.4 83 62.7
Thhalv10013150m.g Eutrema salsugineum HOM05D005233 ORTHO05D006308 1.5e-22 109.4 82 62.2
FAN27G0538 Fragaria x ananassa HOM05D005233 ORTHO05D006308 1.5e-22 109.4 88 60.2
VMungo1309G2609 Vigna mungo HOM05D005233 ORTHO05D006308 2.0e-22 109.0 91 60.4
Lsat_1_v5_gn_6_22621 Lactuca sativa HOM05D005233 ORTHO05D006308 4.4e-22 107.8 91 58.2
FAN20G2629 Fragaria x ananassa HOM05D005233 ORTHO05D006308 5.8e-22 107.5 87 59.8
Nitab4.5_0001515g0020 Nicotiana tabacum HOM05D005233 ORTHO05D006308 5.8e-22 107.5 83 61.4
Lj7C700G7 Lonicera japonica HOM05D005233 ORTHO05D006308 7.6e-22 107.1 91 62.6
COL.COLO4_20973 Corchorus olitorius HOM05D005233 ORTHO05D006308 9.9e-22 106.7 89 59.6
TPR.G15100 Trifolium pratense HOM05D005233 ORTHO05D006308 9.9e-22 106.7 91 57.1
Eucgr.C00552 Eucalyptus grandis HOM05D005233 ORTHO05D006308 1.3e-21 106.3 91 61.5
PSO210G1892 Papaver somniferum HOM05D005233 ORTHO05D006308 1.3e-21 106.3 96 55.2
Thecc.09G045600 Theobroma cacao HOM05D005233 ORTHO05D006308 1.3e-21 106.3 88 62.5
Atru.BG.8.p Acer truncatum HOM05D005233 ORTHO05D006308 1.7e-21 105.9 75 69.3
Lsat_1_v5_gn_5_33641 Lactuca sativa HOM05D005233 ORTHO05D006308 2.2e-21 105.5 91 60.4
ClCG08G012200 Citrullus lanatus HOM05D005233 ORTHO05D006308 2.9e-21 105.1 91 60.4
Lalb_Chr23g0269651 Lupinus albus HOM05D005233 ORTHO05D006308 2.9e-21 105.1 91 59.3
Sp6g32030 Schrenkiella parvula HOM05D005233 ORTHO05D006308 3.7e-21 104.8 81 61.7
DCAR_003122 Daucus carota HOM05D005233 ORTHO05D006308 4.9e-21 104.4 87 59.8
Potri.018G044400 Populus trichocarpa HOM05D005233 ORTHO05D006308 4.9e-21 104.4 79 63.3
Sopen08g020400 Solanum pennellii HOM05D005233 ORTHO05D006308 4.9e-21 104.4 91 58.2
AUR62039706 Chenopodium quinoa HOM05D005233 ORTHO05D006308 6.4e-21 104.0 82 62.2
Rhsim02G0177000 Rhododendron simsii HOM05D005233 ORTHO05D006308 8.4e-21 103.6 60 85.0
Glyma.04G084400 Glycine max HOM05D005233 ORTHO05D006308 1.1e-20 103.2 89 58.4
C02p05220 Brassica napus HOM05D005233 ORTHO05D006308 2.4e-20 102.1 79 62.0
BolC2t06473H Brassica oleracea HOM05D005233 ORTHO05D006308 2.4e-20 102.1 79 62.0
Cpa.g.sc78.3 Carica papaya HOM05D005233 ORTHO05D006308 2.4e-20 102.1 84 61.9
Phvul.009G110000 Phaseolus vulgaris HOM05D005233 ORTHO05D006308 2.4e-20 102.1 91 56.0
SalBow4G2901 Salvia bowleyana HOM05D005233 ORTHO05D006308 2.4e-20 102.1 85 62.4
CAN.G400.13 Capsicum annuum HOM05D005233 ORTHO05D006308 3.2e-20 101.7 83 60.2
BcaNung01936 Brassica carinata HOM05D005233 ORTHO05D006308 4.1e-20 101.3 82 59.8
Carub.0006s1005 Capsella rubella HOM05D005233 ORTHO05D006308 5.4e-20 100.9 82 59.8
Migut.A00200 Erythranthe guttata HOM05D005233 ORTHO05D006308 5.4e-20 100.9 92 57.6
HanXRQChr13g0402051 Helianthus annuus HOM05D005233 ORTHO05D006308 5.4e-20 100.9 86 58.1
AUR62009274 Chenopodium quinoa HOM05D005233 ORTHO05D006308 7.1e-20 100.5 83 60.2
PGR031G2838 Punica granatum HOM05D005233 ORTHO05D006308 2.1e-19 99.0 82 61.0
A02p01080 Brassica napus HOM05D005233 ORTHO05D006308 3.5e-19 98.2 82 57.3
BraA02t05088Z Brassica rapa HOM05D005233 ORTHO05D006308 3.5e-19 98.2 82 57.3
Cc08_g09660 Coffea canephora HOM05D000189 ORTHO05D006308 4.6e-19 97.8 82 61.0
HanXRQChr08g0234411 Helianthus annuus HOM05D005233 ORTHO05D006308 4.6e-19 97.8 76 64.5
BcaC03g13376 Brassica carinata HOM05D005233 ORTHO05D006308 6.0e-19 97.4 82 58.5
Glyma.14G145900 Glycine max HOM05D005233 ORTHO05D006308 7.8e-19 97.1 79 63.3
Ca_15589_v3 Cicer arietinum L. HOM05D005233 ORTHO05D006308 1.0e-18 96.7 91 53.8
ECA233G5498 Erigeron canadensis HOM05D005233 ORTHO05D006308 1.0e-18 96.7 91 54.9
Ah.16g105800 Amaranthus hybridus HOM05D005233 ORTHO05D006308 1.7e-18 95.9 81 54.3
Oeu043884.1 Olea europaea HOM05D005233 ORTHO05D006308 1.7e-18 95.9 82 58.5
Medtr3g109650 Medicago truncatula HOM05D005233 ORTHO05D006308 8.6e-18 93.6 91 52.7
Os01g0725600 Oryza sativa ssp. japonica HOM05D005233 ORTHO05D006308 1.1e-17 93.2 76 64.5
ECA246G0608 Erigeron canadensis HOM05D005233 ORTHO05D006308 1.5e-17 92.8 84 57.1
Medtr1g006695 Medicago truncatula HOM05D005233 ORTHO05D006308 1.9e-17 92.4 84 56.0
CANSAT35G1732 Cannabis sativa HOM05D005233 ORTHO05D006308 3.3e-17 91.7 82 56.1
Phvul.001G074200 Phaseolus vulgaris HOM05D005233 ORTHO05D006308 4.3e-17 91.3 78 59.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 5.6e-17 90.9 76 60.5
arahy.Tifrunner.gnm1.ann1.MXXD4G Arachis hypogaea HOM05D005233 ORTHO05D006308 7.3e-17 90.5 105 50.5
EL10Ac2g04015 Beta vulgaris HOM05D005233 ORTHO05D006308 9.6e-17 90.1 81 56.8
Ca_12755_v3 Cicer arietinum L. HOM05D005233 ORTHO05D006308 9.6e-17 90.1 82 56.1
TPR.G24514 Trifolium pratense HOM05D005233 ORTHO05D006308 1.2e-16 89.7 84 56.0
Hund19511 Selenicereus undatus HOM05D005233 ORTHO05D006308 3.6e-16 88.2 76 59.2
Sed0010019 Sechium edule HOM05D005233 ORTHO05D006308 1.2e-14 83.2 63 60.3
SEGI_28740 Sequoiadendron giganteum HOM05D005233 ORTHO05D006308 1.5e-14 82.8 83 55.4
Pp3c21_18100 Physcomitrium patens HOM05D005233 ORTHO05D006308 3.4e-14 81.6 93 45.2
arahy.Tifrunner.gnm1.ann1.8C5A90 Arachis hypogaea HOM05D005233 ORTHO05D006308 4.4e-14 81.3 125 41.6
SGA_v2.0_scaffold103G30010 Striga asiatica HOM05D005233 ORTHO05D006308 1.7e-13 79.3 115 41.7
SGA_v2.0_scaffold103G30008 Striga asiatica HOM05D005233 ORTHO05D006308 8.4e-13 77.0 110 40.9
HPP92_005574 Vanilla planifolia HOM05D005233 ORTHO05D006308 1.6e-11 72.8 59 61.0
MSTRG.9075 Avicennia marina HOM05D005233 ORTHO05D006308 2.5e-09 65.5 61 54.1
CBR_g29831 Chara braunii HOM05D005233 ORTHO05D006308 9.6e-09 63.5 117 35.0
MBI04_g45218_MAGBIO Magnolia biondii HOM05D005233 ORTHO05D006308 1.4e-07 59.7 110 38.2
BraA09t36493Z Brassica rapa HOM05D000189 ORTHO05D004078 1.8e-07 59.3 77 36.4
PGR102G2655 Punica granatum HOM05D000189 ORTHO05D004078 4.0e-07 58.2 76 36.8
CBR_g30780 Chara braunii HOM05D000189 ORTHO05D006628 5.3e-07 57.8 86 37.2
FvH4_1g25000 Fragaria vesca HOM05D000189 ORTHO05D004078 5.3e-07 57.8 72 37.5
FAN19G0294 Fragaria x ananassa HOM05D000189 ORTHO05D004078 5.3e-07 57.8 72 37.5
FAN23G2343 Fragaria x ananassa HOM05D000189 ORTHO05D004078 5.3e-07 57.8 72 37.5
FAN26G2393 Fragaria x ananassa HOM05D000189 ORTHO05D004078 5.3e-07 57.8 72 37.5
FAN28G2821 Fragaria x ananassa HOM05D000189 ORTHO05D004078 5.3e-07 57.8 72 37.5
Lj4g0027354 Lotus japonicus HOM05D000189 ORTHO05D004078 5.3e-07 57.8 72 37.5
Sp2g26920 Schrenkiella parvula HOM05D000189 ORTHO05D004078 5.3e-07 57.8 76 39.5
SMO266G0099 Selaginella moellendorffii HOM05D000189 ORTHO05D004078 9.0e-07 57.0 73 45.2
Glyma.05G194400 Glycine max HOM05D000189 ORTHO05D004078 1.2e-06 56.6 69 40.6
unitig_747.g21668 Utricularia gibba HOM05D000189 ORTHO05D007542 1.2e-06 56.6 77 41.6
AL8G41090 Arabidopsis lyrata HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 38.2
BcaNung04639 Brassica carinata HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 38.2
A02p43030 Brassica napus HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 38.2
BraA02t09225Z Brassica rapa HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 38.2
Thhalv10004234m.g Eutrema salsugineum HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 38.2
Medtr0095s0070 Medicago truncatula HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 32.9
Medtr8g094410 Medicago truncatula HOM05D000189 ORTHO05D004078 1.5e-06 56.2 76 32.9
arahy.Tifrunner.gnm1.ann1.56CBQX Arachis hypogaea HOM05D000189 ORTHO05D004078 2.0e-06 55.8 75 42.7
RcHm_v2.0_Chr2g0122641 Rosa chinensis HOM05D000189 ORTHO05D004078 2.0e-06 55.8 72 37.5
CDE02G3989 Ceratophyllum demersum HOM05D000189 ORTHO05D004078 2.6e-06 55.5 75 38.7
CDE08G1310 Ceratophyllum demersum HOM05D000189 ORTHO05D004078 2.6e-06 55.5 75 38.7
MD15G1136000 Malus domestica HOM05D000189 ORTHO05D004078 2.6e-06 55.5 75 36.0
PRCOL_00006075 Prasinoderma coloniale HOM05D000189 ORTHO05D049013 2.6e-06 55.5 75 40.0
Atru.chr4.1006 Acer truncatum HOM05D000189 ORTHO05D004078 3.4e-06 55.1 72 38.9
Cpa.g.sc37.14 Carica papaya HOM05D000189 ORTHO05D004078 3.4e-06 55.1 76 34.2
CBR_g39552 Chara braunii HOM05D000189 ORTHO05D004451 3.4e-06 55.1 77 36.4
Lalb_Chr12g0203031 Lupinus albus HOM05D000189 ORTHO05D004078 3.4e-06 55.1 72 36.1
Phvul.002G274700 Phaseolus vulgaris HOM05D000189 ORTHO05D004078 3.4e-06 55.1 48 47.9
Pp3c5_28880 Physcomitrium patens HOM05D000189 ORTHO05D012441 3.4e-06 55.1 78 37.2
Prupe.4G277200 Prunus persica HOM05D000189 ORTHO05D004078 3.4e-06 55.1 75 36.0
Rhsim10G0127200 Rhododendron simsii HOM05D000189 ORTHO05D004078 3.4e-06 55.1 75 37.3
SGA_v2.0_scaffold33G13475 Striga asiatica HOM05D000189 ORTHO05D006628 3.4e-06 55.1 85 40.0
GSVIVG01022347001 Vitis vinifera HOM05D000189 ORTHO05D004078 3.4e-06 55.1 75 36.0
Zm00001eb179510 Zea mays HOM05D000189 ORTHO05D006628 3.4e-06 55.1 81 39.5
arahy.Tifrunner.gnm1.ann1.WN2TW1 Arachis hypogaea HOM05D000189 ORTHO05D004078 4.4e-06 54.7 75 42.7
BcaC01g02636 Brassica carinata HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
A06p30470 Brassica napus HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
A09p08430 Brassica napus HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
C03p62590 Brassica napus HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
C09p09540 Brassica napus HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
BolC3t18516H Brassica oleracea HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
BraA06t25996Z Brassica rapa HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 35.5
Carub.0008s2463 Capsella rubella HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 36.8
THA.LOC104804585 Tarenaya hassleriana HOM05D000189 ORTHO05D004078 4.4e-06 54.7 76 38.2
AagrBONN_evm.TU.Sc2ySwM_228.1882 Anthoceros agrestis HOM05D003842 ORTHO05D004436 5.8e-06 54.3 75 36.0
AT5G63860 Arabidopsis thaliana HOM05D000189 ORTHO05D004078 5.8e-06 54.3 76 36.8
BcaC03g18228 Brassica carinata HOM05D000189 ORTHO05D004078 5.8e-06 54.3 67 41.8
CSS0029875 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 5.8e-06 54.3 75 37.3
CARHR277760 Cardamine hirsuta HOM05D000189 ORTHO05D004078 5.8e-06 54.3 76 36.8
Cre08.g364550 Chlamydomonas reinhardtii HOM05D000747 ORTHO05D012441 5.8e-06 54.3 74 39.2
ECA236G1917 Erigeron canadensis HOM05D000189 ORTHO05D007542 5.8e-06 54.3 80 35.0
QL10p041044 Quercus lobata HOM05D000189 ORTHO05D004078 5.8e-06 54.3 72 36.1
Hund07229 Selenicereus undatus HOM05D000189 ORTHO05D004078 5.8e-06 54.3 72 43.1
Aa31LG1G18040 Aethionema arabicum HOM05D000189 ORTHO05D004078 7.6e-06 53.9 76 38.2
Ah.06g191130 Amaranthus hybridus HOM05D000189 ORTHO05D004078 7.6e-06 53.9 73 42.5
COL.COLO4_14746 Corchorus olitorius HOM05D002600 ORTHO05D003013 7.6e-06 53.9 74 41.9
Lj2A423G50 Lonicera japonica HOM05D000189 ORTHO05D004078 7.6e-06 53.9 72 37.5
Mapoly0011s0008 Marchantia polymorpha HOM05D000189 ORTHO05D012441 7.6e-06 53.9 74 35.1
Psat7g044560 Pisum sativum HOM05D000189 ORTHO05D004078 7.6e-06 53.9 49 42.9
Sopen05g015830 Solanum pennellii HOM05D000189 ORTHO05D004078 7.6e-06 53.9 76 36.8
VMungo0251G3467 Vigna mungo HOM05D000189 ORTHO05D004078 7.6e-06 53.9 72 38.9
arahy.Tifrunner.gnm1.ann1.F1F8UR Arachis hypogaea HOM05D000189 ORTHO05D004078 9.9e-06 53.5 72 37.5
BcaB02g09771 Brassica carinata HOM05D000189 ORTHO05D004078 9.9e-06 53.5 76 34.2
DCAR_009595 Daucus carota HOM05D000189 ORTHO05D004078 9.9e-06 53.5 70 38.6
MCO09G729 Micromonas commoda HOM05D000189 ORTHO05D003013 9.9e-06 53.5 72 43.1
Nitab4.5_0000415g0020 Nicotiana tabacum HOM05D000189 ORTHO05D004078 9.9e-06 53.5 45 51.1
Nitab4.5_0005825g0010 Nicotiana tabacum HOM05D000189 ORTHO05D004078 9.9e-06 53.5 45 51.1
Os04g0435700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D004078 9.9e-06 53.5 72 40.3
Pp3c24_9770 Physcomitrium patens HOM05D002600 ORTHO05D003013 9.9e-06 53.5 76 44.7
SMO358G0250 Selaginella moellendorffii HOM05D000189 ORTHO05D007542 9.9e-06 53.5 88 34.1
THA.LOC104819349 Tarenaya hassleriana HOM05D000189 ORTHO05D004078 9.9e-06 53.5 76 36.8
Thecc.01G139000 Theobroma cacao HOM05D000189 ORTHO05D004078 9.9e-06 53.5 70 37.1
Zm00001eb082500 Zea mays HOM05D000189 ORTHO05D004078 9.9e-06 53.5 72 38.9


User provided reference genes

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