Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-304 1048.1 524 100.0
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-286 988.8 524 95.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.7e-254 880.9 524 84.9
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.0e-254 880.2 524 84.5
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 6.4e-251 870.5 521 83.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 3.2e-250 868.2 524 84.9
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.7e-243 845.9 500 85.0
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.3e-240 835.5 577 75.6
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.7e-235 819.3 524 80.9
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 3.0e-232 808.5 520 79.8
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 8.9e-229 797.0 535 76.1
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 8.9e-229 797.0 523 77.2
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 7.6e-228 793.9 532 76.5
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.3e-227 793.1 525 78.3
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 9.2e-226 786.9 523 76.5
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 9.2e-226 786.9 533 76.4
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.6e-225 786.2 523 75.5
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.7e-225 785.4 458 85.8
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 3.5e-225 785.0 469 85.1
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.5e-225 785.0 523 76.7
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 4.6e-225 784.6 477 83.2
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.7e-224 782.7 530 76.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.3e-224 782.3 521 76.2
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 3.9e-224 781.6 524 76.3
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 6.6e-224 780.8 529 76.7
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 2.5e-223 778.9 534 75.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 5.6e-223 777.7 498 80.3
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 5.6e-223 777.7 458 84.9
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 9.6e-223 776.9 532 75.4
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 9.6e-223 776.9 532 75.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-222 776.2 533 75.2
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.6e-222 775.0 532 75.6
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.4e-221 773.1 520 75.0
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.6e-220 768.8 485 80.8
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.6e-220 768.8 492 80.1
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 3.4e-220 768.5 528 75.8
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 4.4e-220 768.1 525 75.4
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 7.6e-220 767.3 521 75.6
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 9.9e-220 766.9 524 76.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 2.9e-219 765.4 522 76.2
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 3.8e-219 765.0 528 74.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 3.8e-219 765.0 500 78.8
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 8.4e-219 763.8 520 74.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 8.4e-219 763.8 535 73.3
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.1e-218 763.5 524 75.0
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.4e-218 763.1 450 83.8
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.4e-218 762.3 523 74.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.2e-218 761.5 527 74.4
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-217 760.0 522 74.5
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.0e-217 757.7 493 78.7
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 6.0e-217 757.7 538 74.2
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 7.8e-217 757.3 507 76.7
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.3e-216 756.5 556 71.0
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.3e-216 755.7 538 74.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 3.0e-216 755.4 540 74.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.5e-215 753.1 505 77.0
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 2.5e-215 752.3 493 78.5
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 2.5e-215 752.3 536 74.3
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 3.3e-215 751.9 448 83.5
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 5.6e-215 751.1 527 72.5
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 5.6e-215 751.1 527 72.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 7.3e-215 750.7 445 84.0
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.3e-214 750.0 519 75.3
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 4.8e-214 748.0 425 88.2
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.4e-213 745.7 516 74.2
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.1e-213 745.3 449 81.5
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.2e-212 743.4 425 87.5
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.4e-212 741.9 459 81.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.8e-212 741.1 437 83.3
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 5.8e-212 741.1 487 78.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.3e-211 740.0 475 79.4
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-211 739.6 477 78.4
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.9e-211 738.8 485 77.5
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.8e-211 738.4 477 78.6
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.4e-210 736.5 526 72.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 2.4e-210 735.7 434 84.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.4e-210 734.6 424 85.6
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 6.0e-209 731.1 501 74.1
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 7.9e-209 730.7 453 80.8
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.3e-208 729.9 475 78.9
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.5e-207 726.5 501 75.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.5e-207 726.5 449 80.6
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.9e-207 726.1 490 75.3
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 5.6e-207 724.5 432 81.9
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-206 723.4 439 81.8
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.4e-205 719.2 517 72.0
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 9.0e-205 717.2 552 68.5
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.4e-204 715.3 523 71.1
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 3.4e-204 715.3 489 74.4
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 5.8e-204 714.5 556 68.2
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-203 713.4 519 71.5
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.9e-203 712.2 522 69.9
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.9e-203 712.2 428 82.5
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 6.4e-203 711.1 547 69.8
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 8.4e-203 710.7 437 79.6
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.1e-202 710.3 529 69.6
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.4e-202 709.9 483 73.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 7.1e-202 707.6 457 78.6
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.1e-201 706.1 422 83.4
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.6e-201 704.9 457 78.1
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.6e-201 704.9 457 78.1
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.0e-200 703.7 426 81.2
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 5.1e-200 701.4 439 78.8
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.5e-199 699.9 462 77.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.3e-198 696.8 520 70.2
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.8e-198 695.7 519 70.1
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.7e-198 695.3 478 73.0
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.8e-197 693.0 435 79.3
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 5.3e-197 691.4 516 69.2
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.3e-192 676.8 475 74.9
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.1e-192 674.9 399 85.2
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.5e-191 673.3 580 62.1
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.8e-190 669.1 478 73.6
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.0e-184 650.6 426 74.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 8.2e-182 641.0 430 73.3
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 9.1e-181 637.5 445 69.4
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.3e-179 633.6 430 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.2e-172 610.5 426 70.4
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 7.9e-169 597.8 365 80.8
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.2e-158 563.1 324 85.8
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-156 557.0 397 73.8
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.5e-156 555.4 299 94.6
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-148 530.8 302 86.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-147 526.9 310 83.9
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.5e-146 523.9 432 61.8
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 8.0e-145 518.1 321 80.7
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.0e-144 516.2 299 88.3
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 9.8e-143 511.1 329 77.2
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.5e-138 497.3 430 60.7
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.2e-137 494.2 449 56.8
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.2e-134 483.4 344 74.1
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.8e-120 437.2 273 78.8
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.6e-119 433.3 424 55.4
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.3e-106 389.4 428 46.3
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 8.7e-99 365.2 242 77.7
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.2e-92 344.7 432 43.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.9e-78 296.2 175 80.6
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.3e-73 279.3 358 43.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.5e-70 269.2 137 99.3
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.2e-53 212.6 186 63.4
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-49 201.4 131 80.2
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.8e-48 198.0 247 50.2
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.0e-43 182.2 207 52.2
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 6.7e-43 179.5 180 51.7
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 5.7e-42 176.4 120 70.0
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.6e-39 168.3 96 83.3
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 7.5e-34 149.4 90 81.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 3.3e-29 134.0 84 75.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 3.3e-29 134.0 84 75.0
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 6.1e-28 129.8 95 64.2
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.4e-27 128.6 80 76.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.8e-27 128.3 95 64.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 6.8e-27 126.3 95 63.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 2.6e-26 124.4 92 64.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 4.1e-24 117.1 78 70.5
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 3.8e-22 110.5 70 75.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 3.8e-22 110.5 70 75.7
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 8.6e-22 109.4 70 74.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.8e-20 104.4 82 68.3
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 2.3e-19 101.3 258 31.8
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 4.1e-16 90.5 53 81.1
Nitab4.5_0001773g0070 Nicotiana tabacum HOM05D000974 ORTHO05D285698 2.1e-07 61.6 44 61.4


User provided reference genes

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