Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025057 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.2e-39 166.0 84 100.0
CSS0021013 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.8e-35 152.1 86 91.9
CSS0045372 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.2e-34 149.4 94 86.2
CSS0026956 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 4.6e-34 147.5 94 85.1
CSS0016023 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.0e-33 146.4 94 84.0
CSS0013633 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.3e-33 146.0 94 85.1
CSS0002739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 8.9e-30 133.3 91 82.4
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 8.4e-12 73.6 66 68.2
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 8.4e-12 73.6 66 68.2
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 4.6e-10 67.8 66 60.6
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 4.6e-10 67.8 66 60.6
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 6.0e-10 67.4 66 60.6
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 7.8e-10 67.0 66 59.1
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 1.3e-09 66.2 66 57.6
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 1.7e-09 65.9 66 57.6
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 3.0e-09 65.1 66 57.6
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 3.9e-09 64.7 66 59.1
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 6.6e-09 63.9 66 54.5
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 8.7e-09 63.5 66 57.6
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 1.5e-08 62.8 66 54.5
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.5e-08 62.8 65 60.0
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 1.9e-08 62.4 66 54.5
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 2.5e-08 62.0 66 54.5
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 2.5e-08 62.0 66 54.5
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 2.5e-08 62.0 66 54.5
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 3.3e-08 61.6 64 54.7
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 3.3e-08 61.6 66 57.6
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 3.3e-08 61.6 64 56.2
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 3.3e-08 61.6 66 54.5
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 3.3e-08 61.6 66 54.5
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 4.3e-08 61.2 66 51.5
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 4.3e-08 61.2 65 53.8
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 5.6e-08 60.8 65 55.4
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 5.6e-08 60.8 64 54.7
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 5.6e-08 60.8 66 53.0
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 9.6e-08 60.1 66 59.1
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 1.2e-07 59.7 64 53.1
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 1.2e-07 59.7 64 54.7
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.6e-07 59.3 66 56.1
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 1.6e-07 59.3 66 54.5
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 2.1e-07 58.9 66 51.5
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 2.8e-07 58.5 66 57.6
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 2.8e-07 58.5 63 54.0
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 2.8e-07 58.5 64 53.1
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 4.7e-07 57.8 64 53.1
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 4.7e-07 57.8 66 50.0
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 6.2e-07 57.4 66 48.5
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 8.1e-07 57.0 63 54.0
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 1.1e-06 56.6 65 50.8
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 1.1e-06 56.6 64 51.6
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 1.1e-06 56.6 64 51.6
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 1.1e-06 56.6 64 51.6
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 1.1e-06 56.6 66 50.0
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 1.1e-06 56.6 56 50.0
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 1.1e-06 56.6 63 52.4
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 1.4e-06 56.2 66 53.0
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 1.4e-06 56.2 66 50.0
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.8e-06 55.8 63 52.4
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.8e-06 55.8 63 52.4
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 1.8e-06 55.8 63 50.8
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.8e-06 55.8 64 53.1
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 1.8e-06 55.8 55 50.9
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 2.4e-06 55.5 68 50.0
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 2.4e-06 55.5 63 52.4
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 2.4e-06 55.5 63 52.4
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 3.1e-06 55.1 65 47.7
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 3.1e-06 55.1 66 53.0
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 3.1e-06 55.1 66 53.0
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 3.1e-06 55.1 67 50.7
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 3.1e-06 55.1 63 54.0
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 3.1e-06 55.1 66 53.0
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 4.0e-06 54.7 63 50.8
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 4.0e-06 54.7 66 53.0
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 5.2e-06 54.3 65 52.3
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 5.2e-06 54.3 66 51.5
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 5.2e-06 54.3 66 48.5
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 9.0e-06 53.5 66 51.5
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 9.0e-06 53.5 63 55.6
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 9.0e-06 53.5 51 56.9


User provided reference genes

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