Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025017 Camellia sinensis var. sinensis HOM05D035588 ORTHO05D110555 5.9e-45 183.7 87 100.0
CSS0005976 Camellia sinensis var. sinensis HOM05D035588 ORTHO05D113403 2.1e-18 95.5 89 58.4
Os03g0329200 Oryza sativa ssp. japonica HOM05D000857 ORTHO05D001382 1.2e-08 63.2 102 42.2
Hma1.2p1_0579F.1_g182610 Hydrangea macrophylla HOM05D000857 ORTHO05D001382 1.5e-08 62.8 91 45.1
TAR633G1867 Trochodendron aralioides HOM05D000857 ORTHO05D001382 2.0e-08 62.4 91 46.2
CSS0004029 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D001382 2.6e-08 62.0 91 46.2
CSS0035114 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D001382 2.6e-08 62.0 91 46.2
Gorai.010G191400 Gossypium raimondii HOM05D000857 ORTHO05D001382 2.6e-08 62.0 91 46.2
CDE02G2503 Ceratophyllum demersum HOM05D000857 ORTHO05D001382 3.4e-08 61.6 91 45.1
C08p27230 Brassica napus HOM05D000857 ORTHO05D001382 9.9e-08 60.1 95 44.2
BolC8t50339H Brassica oleracea HOM05D000857 ORTHO05D001382 9.9e-08 60.1 95 44.2
Glyma.09G225600 Glycine max HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
Glyma.12G010800 Glycine max HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
Glyma.12G010900 Glycine max HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
Oeu049462.3 Olea europaea HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 42.9
Os03g0328900 Oryza sativa ssp. japonica HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
Os07g0682400 Oryza sativa ssp. japonica HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
Sp5g00100 Schrenkiella parvula HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 46.2
Zm00001eb015700 Zea mays HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
Zm00001eb330830 Zea mays HOM05D000857 ORTHO05D001382 9.9e-08 60.1 91 45.1
COL.COLO4_19331 Corchorus olitorius HOM05D000857 ORTHO05D001382 1.3e-07 59.7 91 45.1
HPP92_000780 Vanilla planifolia HOM05D000857 ORTHO05D001382 1.3e-07 59.7 91 44.0
HPP92_026805 Vanilla planifolia HOM05D000857 ORTHO05D001382 1.3e-07 59.7 91 44.0
CDE04G2804 Ceratophyllum demersum HOM05D000857 ORTHO05D001382 1.7e-07 59.3 114 38.6
Lsat_1_v5_gn_1_99660 Lactuca sativa HOM05D000857 ORTHO05D001382 1.7e-07 59.3 91 44.0
Actinidia06284 Actinidia chinensis HOM05D000857 ORTHO05D001382 2.2e-07 58.9 90 44.4
Aqoxy2G00020 Aquilegia oxysepala HOM05D000857 ORTHO05D001382 2.2e-07 58.9 112 37.5
Lj9A643T36 Lonicera japonica HOM05D000857 ORTHO05D001382 2.2e-07 58.9 91 44.0
Rhsim07G0061000 Rhododendron simsii HOM05D000857 ORTHO05D001382 2.2e-07 58.9 91 44.0
vmacro13710 Vaccinium macrocarpon HOM05D000857 ORTHO05D001382 2.2e-07 58.9 91 44.0
Ca_14188_v3 Cicer arietinum L. HOM05D000857 ORTHO05D001382 2.9e-07 58.5 91 44.0
Duzib106G0205 Durio zibethinus HOM05D000857 ORTHO05D001382 2.9e-07 58.5 91 44.0
Lalb_Chr03g0024161 Lupinus albus HOM05D000857 ORTHO05D001382 2.9e-07 58.5 91 44.0
Manes.11G101600 Manihot esculenta HOM05D000857 ORTHO05D001382 2.9e-07 58.5 91 44.0
Potri.003G204300 Populus trichocarpa HOM05D000857 ORTHO05D001382 2.9e-07 58.5 91 44.0
Atru.chr11.2556 Acer truncatum HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 44.0
CAN.G410.10 Capsicum annuum HOM05D000857 ORTHO05D001382 3.8e-07 58.2 119 36.1
Lj7A575G46 Lonicera japonica HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 44.0
Nitab4.5_0000316g0380 Nicotiana tabacum HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 41.8
Nitab4.5_0002187g0030 Nicotiana tabacum HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 41.8
Peaxi162Scf01115g00013 Petunia axillaris HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 41.8
Solyc01g088100.4 Solanum lycopersicum HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 41.8
Sopen10g018000 Solanum pennellii HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 41.8
PGSC0003DMG400006828 Solanum tuberosum HOM05D000857 ORTHO05D001382 3.8e-07 58.2 91 41.8
ECA248G1049 Erigeron canadensis HOM05D000857 ORTHO05D001382 4.9e-07 57.8 91 42.9
Sopen03g020970 Solanum pennellii HOM05D000857 ORTHO05D001382 4.9e-07 57.8 91 41.8
TAR636G0714 Trochodendron aralioides HOM05D000857 ORTHO05D001382 4.9e-07 57.8 89 44.9
Actinidia02251 Actinidia chinensis HOM05D000857 ORTHO05D001382 6.4e-07 57.4 91 42.9
Actinidia21531 Actinidia chinensis HOM05D000857 ORTHO05D001382 6.4e-07 57.4 91 42.9
Aa31LG10G17300 Aethionema arabicum HOM05D000857 ORTHO05D001382 6.4e-07 57.4 91 44.0
BraA03t13964Z Brassica rapa HOM05D000857 ORTHO05D001382 6.4e-07 57.4 91 44.0
Dinv13978 Davidia involucrata HOM05D000857 ORTHO05D001382 6.4e-07 57.4 112 38.4
Gohir.D06G164200 Gossypium hirsutum HOM05D000857 ORTHO05D001382 6.4e-07 57.4 89 44.9
Medtr3g436060 Medicago truncatula HOM05D000857 ORTHO05D001382 6.4e-07 57.4 91 42.9
Oeu027359.3 Olea europaea HOM05D000857 ORTHO05D001382 6.4e-07 57.4 91 41.8
CiPaw.13G154700 Carya illinoinensis HOM05D000857 ORTHO05D001382 8.4e-07 57.0 89 43.8
Haze_23176 Corylus avellana HOM05D000857 ORTHO05D001382 8.4e-07 57.0 89 43.8
HanXRQChr11g0341081 Helianthus annuus HOM05D000857 ORTHO05D001382 8.4e-07 57.0 91 42.9
PSO384G2840 Papaver somniferum HOM05D000857 ORTHO05D001382 8.4e-07 57.0 89 43.8
RcHm_v2.0_Chr1g0318971 Rosa chinensis HOM05D000857 ORTHO05D001382 8.4e-07 57.0 91 44.0
Sed0000318 Sechium edule HOM05D000857 ORTHO05D001382 8.4e-07 57.0 91 42.9
GSVIVG01001467001 Vitis vinifera HOM05D000857 ORTHO05D001382 8.4e-07 57.0 89 44.9
Aa31LG10G7010 Aethionema arabicum HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
AL5G32460 Arabidopsis lyrata HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
AT3G51950 Arabidopsis thaliana HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BcaB01g00397 Brassica carinata HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BcaB01g00458 Brassica carinata HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BcaB02g08594 Brassica carinata HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BcaC02g09289 Brassica carinata HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BcaC06g33018 Brassica carinata HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
A04p07350 Brassica napus HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
A09p45040 Brassica napus HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
C04p40960 Brassica napus HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BolC4t25679H Brassica oleracea HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BraA04t16430Z Brassica rapa HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
BraA09t39965Z Brassica rapa HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
Carub.0005s1830 Capsella rubella HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
CARHR161580 Cardamine hirsuta HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
DCAR_022365 Daucus carota HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
Duzib114G0023 Durio zibethinus HOM05D000857 ORTHO05D001382 1.1e-06 56.6 94 42.6
Thhalv10010276m.g Eutrema salsugineum HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
Sp5g10320 Schrenkiella parvula HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
Sopen01g034970 Solanum pennellii HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 41.8
Zm00001eb395300 Zea mays HOM05D000857 ORTHO05D001382 1.1e-06 56.6 91 44.0
Aqoxy1G00018 Aquilegia oxysepala HOM05D000857 ORTHO05D001382 1.4e-06 56.2 89 43.8
Dinv07417 Davidia involucrata HOM05D000857 ORTHO05D001382 1.4e-06 56.2 89 43.8
THA.LOC104819109 Tarenaya hassleriana HOM05D000857 ORTHO05D001382 1.4e-06 56.2 91 41.8
AT3G63450 Arabidopsis thaliana HOM05D000857 ORTHO05D001382 1.9e-06 55.8 88 44.3
MSTRG.5052 Avicennia marina HOM05D000857 ORTHO05D001382 1.9e-06 55.8 90 42.2
A03p48590 Brassica napus HOM05D000857 ORTHO05D001382 1.9e-06 55.8 91 42.9
Duzib128G0003 Durio zibethinus HOM05D000857 ORTHO05D001382 1.9e-06 55.8 91 44.0
HanXRQChr01g0021001 Helianthus annuus HOM05D000857 ORTHO05D001382 1.9e-06 55.8 91 40.7
Nn2g15925 Nelumbo nucifera HOM05D000857 ORTHO05D001382 1.9e-06 55.8 119 37.8
QL01p003959 Quercus lobata HOM05D000857 ORTHO05D001382 1.9e-06 55.8 89 42.7
SalBow6G4312 Salvia bowleyana HOM05D000857 ORTHO05D001382 1.9e-06 55.8 91 41.8
SalBow6G5566 Salvia bowleyana HOM05D000857 ORTHO05D001382 1.9e-06 55.8 91 41.8
arahy.Tifrunner.gnm1.ann1.W4JVCT Arachis hypogaea HOM05D000857 ORTHO05D001382 2.4e-06 55.5 89 43.8
arahy.Tifrunner.gnm1.ann1.X5Q5RE Arachis hypogaea HOM05D000857 ORTHO05D001382 2.4e-06 55.5 89 43.8
BcaC06g33364 Brassica carinata HOM05D000857 ORTHO05D001382 2.4e-06 55.5 91 42.9
C07p46710 Brassica napus HOM05D000857 ORTHO05D001382 2.4e-06 55.5 91 42.9
BolC7t45187H Brassica oleracea HOM05D000857 ORTHO05D001382 2.4e-06 55.5 91 42.9
Cpa.g.sc197.24 Carica papaya HOM05D000857 ORTHO05D001382 2.4e-06 55.5 91 41.8
Migut.N01811 Erythranthe guttata HOM05D000857 ORTHO05D001382 2.4e-06 55.5 90 41.1
Glyma.09G225700 Glycine max HOM05D000857 ORTHO05D001382 2.4e-06 55.5 89 43.8
Lj3g0015211 Lotus japonicus HOM05D000857 ORTHO05D001382 2.4e-06 55.5 89 43.8
PSO339G4199 Papaver somniferum HOM05D000857 ORTHO05D001382 2.4e-06 55.5 88 43.2
Phvul.011G013800 Phaseolus vulgaris HOM05D000857 ORTHO05D001382 2.4e-06 55.5 89 43.8
SGA_v2.0_scaffold354G49748 Striga asiatica HOM05D000857 ORTHO05D001382 2.4e-06 55.5 90 41.1
VMungo1127G2179 Vigna mungo HOM05D000857 ORTHO05D001382 2.4e-06 55.5 89 43.8
Atru.chr3.2643 Acer truncatum HOM05D000857 ORTHO05D001382 3.2e-06 55.1 90 42.2
arahy.Tifrunner.gnm1.ann1.UVE8C4 Arachis hypogaea HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 42.7
Cfa010835 Carpinus fangiana HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 43.8
Eucgr.G03273 Eucalyptus grandis HOM05D000857 ORTHO05D001382 3.2e-06 55.1 90 42.2
Gohir.A06G158300 Gossypium hirsutum HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 43.8
Medtr0005s0130 Medicago truncatula HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 41.6
Medtr4g043660 Medicago truncatula HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 41.6
Phvul.011G013700 Phaseolus vulgaris HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 42.7
PGR031G0265 Punica granatum HOM05D000857 ORTHO05D001382 3.2e-06 55.1 91 41.8
QL04p012178 Quercus lobata HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 43.8
Sed0006738 Sechium edule HOM05D000857 ORTHO05D001382 3.2e-06 55.1 89 42.7
Sc11g0006810 Simmondsia chinensis HOM05D000857 ORTHO05D001382 3.2e-06 55.1 90 42.2
Solyc05g050460.1 Solanum lycopersicum HOM05D000857 ORTHO05D001382 3.2e-06 55.1 91 40.7
ATR0068G117 Amborella trichopoda HOM05D000857 ORTHO05D001382 4.2e-06 54.7 91 41.8
CANSAT80G1768 Cannabis sativa HOM05D000857 ORTHO05D001382 4.2e-06 54.7 90 43.3
CiPaw.13G009000 Carya illinoinensis HOM05D000857 ORTHO05D001382 4.2e-06 54.7 91 42.9
Ca_26763_v3 Cicer arietinum L. HOM05D000857 ORTHO05D001382 4.2e-06 54.7 89 41.6
FAN16G2230 Fragaria x ananassa HOM05D000857 ORTHO05D001382 4.2e-06 54.7 110 39.1
Psat7g201880 Pisum sativum HOM05D000857 ORTHO05D001382 4.2e-06 54.7 89 41.6
Hund13300 Selenicereus undatus HOM05D000857 ORTHO05D001382 4.2e-06 54.7 89 42.7
Thecc.10G002500 Theobroma cacao HOM05D000857 ORTHO05D001382 4.2e-06 54.7 89 42.7
TPR.G20256 Trifolium pratense HOM05D000857 ORTHO05D001382 4.2e-06 54.7 89 41.6
TPR.G2769 Trifolium pratense HOM05D000857 ORTHO05D001382 4.2e-06 54.7 94 40.4
Manes.06G162000 Manihot esculenta HOM05D000857 ORTHO05D001382 5.4e-06 54.3 88 43.2
Manes.14G004600 Manihot esculenta HOM05D000857 ORTHO05D001382 5.4e-06 54.3 88 43.2
Sed0024405 Sechium edule HOM05D000857 ORTHO05D001382 5.4e-06 54.3 91 41.8
EL10Ac4g10210 Beta vulgaris HOM05D000857 ORTHO05D001382 7.1e-06 53.9 110 35.5
MELO3C011738.2 Cucumis melo HOM05D000857 ORTHO05D001382 7.1e-06 53.9 106 37.7
Lj3g0011829 Lotus japonicus HOM05D000857 ORTHO05D001382 7.1e-06 53.9 89 40.4
Lj3g0023593 Lotus japonicus HOM05D000857 ORTHO05D001382 7.1e-06 53.9 89 40.4
Psat5g213040 Pisum sativum HOM05D000857 ORTHO05D001382 7.1e-06 53.9 89 42.7
Sabra03G0150900 Salix brachista HOM05D000857 ORTHO05D001382 7.1e-06 53.9 89 42.7
VMungo1127G0001 Vigna mungo HOM05D000857 ORTHO05D001382 7.1e-06 53.9 89 42.7
Cpa.g.sc84.25 Carica papaya HOM05D000857 ORTHO05D001382 9.3e-06 53.5 88 42.0
Ciclev10030728m.g Citrus clementina HOM05D000857 ORTHO05D001382 9.3e-06 53.5 89 42.7
Potri.001G020300 Populus trichocarpa HOM05D000857 ORTHO05D001382 9.3e-06 53.5 89 41.6
Sabra01G0015000 Salix brachista HOM05D000857 ORTHO05D001382 9.3e-06 53.5 89 41.6
Hund22002 Selenicereus undatus HOM05D000857 ORTHO05D001382 9.3e-06 53.5 87 42.5
HPP92_007572 Vanilla planifolia HOM05D000857 ORTHO05D001382 9.3e-06 53.5 110 36.4
GSVIVG01031538001 Vitis vinifera HOM05D000857 ORTHO05D001382 9.3e-06 53.5 88 43.2


User provided reference genes

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