Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.2e-286 987.3 476 100.0
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 9.5e-254 879.8 476 88.4
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.8e-244 849.0 476 85.9
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 4.7e-237 824.3 476 82.1
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 6.8e-236 820.5 476 81.9
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.9e-234 815.1 476 80.9
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 3.8e-234 814.7 476 81.9
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 6.0e-232 807.4 461 82.4
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.7e-231 805.8 474 80.4
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 6.6e-231 803.9 498 80.5
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 4.3e-230 801.2 476 81.1
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 7.3e-230 800.4 484 78.9
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.3e-229 799.7 468 80.1
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 2.8e-229 798.5 461 81.3
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 6.2e-229 797.3 585 69.7
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.8e-228 795.8 471 79.0
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 2.4e-228 795.4 466 79.8
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 9.0e-228 793.5 461 80.3
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.2e-227 793.1 461 81.1
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 5.8e-227 790.8 496 76.6
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 9.9e-227 790.0 471 79.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.7e-226 789.3 460 79.6
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 2.9e-226 788.5 466 79.6
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 4.9e-226 787.7 471 79.2
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 3.2e-225 785.0 471 79.0
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 9.3e-225 783.5 468 78.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 9.3e-225 783.5 476 78.4
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.1e-224 782.3 476 77.1
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 3.5e-224 781.6 462 78.6
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 4.6e-224 781.2 469 78.3
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 4.6e-224 781.2 461 79.4
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 6.0e-224 780.8 469 78.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.0e-223 780.0 466 78.8
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.3e-223 779.6 470 78.1
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.3e-223 778.9 469 78.0
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.3e-223 778.9 461 78.1
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 2.3e-223 778.9 476 77.7
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 3.9e-223 778.1 539 70.9
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 5.1e-223 777.7 465 77.8
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.3e-222 775.0 468 77.8
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.3e-222 775.0 476 77.3
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.3e-222 774.6 471 77.9
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 5.6e-222 774.2 471 77.9
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 7.4e-222 773.9 471 77.9
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 1.3e-221 773.1 469 77.6
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.6e-221 772.7 473 77.6
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 1.6e-221 772.7 471 77.9
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 8.1e-221 770.4 461 78.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.1e-220 770.0 461 78.7
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.1e-220 768.5 471 77.1
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 9.0e-220 766.9 461 78.1
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 1.5e-219 766.1 471 75.4
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 2.6e-219 765.4 467 77.3
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.6e-219 765.4 474 76.4
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.4e-219 765.0 461 78.1
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 3.4e-219 765.0 499 75.6
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 4.5e-219 764.6 456 79.2
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 5.8e-219 764.2 471 75.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 7.6e-219 763.8 461 77.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 7.6e-219 763.8 461 76.4
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 2.2e-218 762.3 461 77.2
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.9e-217 759.2 470 74.5
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.4e-217 758.8 470 76.2
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 5.5e-217 757.7 475 75.2
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.1e-216 755.7 481 74.8
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 3.5e-216 755.0 464 77.6
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 4.6e-216 754.6 461 75.9
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 6.0e-216 754.2 476 75.0
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 7.9e-216 753.8 485 74.4
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 3.0e-215 751.9 535 68.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 5.1e-215 751.1 461 75.9
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 6.7e-215 750.7 439 80.4
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.9e-214 749.2 466 76.8
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 1.3e-213 746.5 460 76.1
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.3e-213 746.5 363 99.4
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 1.6e-213 746.1 476 73.7
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 2.8e-213 745.3 460 76.1
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.6e-211 738.8 439 79.7
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 3.4e-211 738.4 469 74.2
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 7.6e-211 737.3 475 72.4
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 2.2e-210 735.7 460 73.5
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.5e-210 734.2 458 77.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 5.5e-209 731.1 466 75.8
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 2.1e-208 729.2 459 73.4
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.7e-208 728.8 459 73.9
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.0e-207 726.9 459 73.9
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.8e-207 726.1 459 73.2
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.5e-206 723.0 476 72.5
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.3e-205 719.9 460 73.3
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 2.1e-205 719.2 469 71.9
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 6.3e-205 717.6 496 69.4
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 8.2e-205 717.2 469 72.1
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-204 716.8 469 71.9
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 4.1e-204 714.9 436 76.6
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.5e-203 713.0 469 71.6
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 2.6e-203 712.2 469 71.6
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 2.9e-202 708.8 462 73.8
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 3.2e-201 705.3 398 85.9
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.1e-198 696.8 421 76.5
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.3e-198 695.3 452 74.3
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 8.2e-197 690.6 421 76.0
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.7e-194 682.9 460 70.7
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 2.5e-193 679.1 439 74.5
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 7.2e-193 677.6 460 70.2
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.6e-192 674.9 476 69.5
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 3.9e-191 671.8 458 69.0
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 2.4e-188 662.5 460 66.7
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 4.5e-187 658.3 421 75.3
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 7.7e-187 657.5 459 67.5
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.6e-184 649.8 464 66.4
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.6e-182 642.5 462 67.5
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.4e-182 641.7 464 65.7
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 2.0e-179 632.9 448 67.4
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 5.9e-179 631.3 459 66.7
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.0e-175 620.5 464 62.1
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.6e-174 615.9 460 64.3
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 4.4e-174 615.1 461 66.6
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.7e-170 603.2 452 63.9
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.5e-169 599.4 453 64.7
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.2e-162 576.2 482 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 4.3e-153 545.4 474 57.8
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 8.0e-144 514.6 351 72.4
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.3e-135 486.5 308 75.6
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.1e-128 461.5 261 85.4
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.0e-122 444.5 418 53.6
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.3e-122 444.1 502 48.2
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.2e-116 422.9 269 74.3
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.0e-114 416.4 316 66.5
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.5e-113 414.1 256 76.6
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 3.9e-106 389.4 335 63.3
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 7.4e-89 332.0 214 69.6
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 9.7e-89 331.6 258 60.5
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 1.6e-83 314.3 197 75.1
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.8e-79 300.8 242 58.7
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.5e-60 238.0 140 83.6
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 5.3e-55 219.5 144 71.5
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 9.1e-55 218.8 176 59.7
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.2e-46 191.8 112 79.5
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 5.0e-45 186.4 182 57.1
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.2e-41 175.3 173 58.4
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.3e-40 171.8 152 63.2
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 2.0e-38 164.5 101 80.2
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.8e-34 151.4 90 77.8
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 4.0e-34 150.2 114 64.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 5.0e-21 106.7 112 58.0
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 7.5e-17 92.8 65 81.5
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.1e-15 89.0 57 63.2
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.5e-12 78.6 62 66.1
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 5.6e-12 76.6 47 83.0
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 5.6e-12 76.6 47 83.0
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 6.2e-11 73.2 56 58.9
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 2.7e-06 57.8 45 64.4
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 2.7e-06 57.8 53 62.3


User provided reference genes

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