Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024955 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 5.9e-133 478.0 337 100.0
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.3e-74 284.3 340 70.0
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 2.6e-72 276.6 322 73.0
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 9.9e-72 274.6 335 72.5
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 4.9e-71 272.3 277 66.1
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 6.4e-71 271.9 278 78.4
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 1.6e-69 267.3 307 65.1
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 2.1e-69 266.9 301 74.1
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 3.5e-69 266.2 352 69.9
CSS0008826 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 7.9e-69 265.0 181 80.1
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 7.9e-69 265.0 302 71.9
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.7e-68 263.8 334 71.0
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 1.5e-67 260.8 364 67.6
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 4.3e-67 259.2 289 76.8
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 7.4e-67 258.5 320 73.8
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 1.3e-66 257.7 271 83.8
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 2.1e-66 256.9 289 75.8
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 3.6e-66 256.1 301 70.8
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 8.1e-66 255.0 345 62.0
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 1.4e-65 254.2 194 71.1
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.4e-65 254.2 194 71.1
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 1.4e-65 254.2 279 64.5
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 1.8e-65 253.8 282 77.0
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 2.4e-65 253.4 277 76.5
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 3.1e-65 253.1 210 66.7
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 6.9e-65 251.9 186 74.7
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 6.9e-65 251.9 319 68.3
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 9.0e-65 251.5 318 67.9
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 1.2e-64 251.1 287 70.4
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 1.5e-64 250.8 281 72.6
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 2.0e-64 250.4 343 66.8
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 5.8e-64 248.8 356 66.6
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 2.2e-63 246.9 350 60.6
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 2.2e-63 246.9 186 74.2
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 2.2e-63 246.9 283 73.1
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 3.8e-63 246.1 343 65.6
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 4.9e-63 245.7 357 64.1
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 8.4e-63 245.0 355 62.8
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 8.4e-63 245.0 346 69.7
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 3.2e-62 243.0 358 63.4
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 5.5e-62 242.3 330 67.3
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 7.1e-62 241.9 382 65.2
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 9.3e-62 241.5 327 69.4
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 1.6e-61 240.7 308 70.8
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 3.5e-61 239.6 330 67.9
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 3.5e-61 239.6 318 67.9
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 4.6e-61 239.2 181 71.8
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 4.6e-61 239.2 327 67.0
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 6.0e-61 238.8 382 58.4
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 7.9e-61 238.4 186 70.4
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 7.9e-61 238.4 168 76.8
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 7.9e-61 238.4 334 65.9
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 1.0e-60 238.0 144 83.3
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 1.3e-60 237.7 177 72.3
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 1.8e-60 237.3 191 70.2
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 1.8e-60 237.3 186 69.4
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 1.8e-60 237.3 327 67.0
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 2.3e-60 236.9 150 80.0
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 2.3e-60 236.9 180 70.6
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 3.0e-60 236.5 150 80.0
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 3.0e-60 236.5 143 81.8
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 3.9e-60 236.1 184 70.1
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 5.1e-60 235.7 151 79.5
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 5.1e-60 235.7 158 77.8
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 8.7e-60 235.0 347 67.4
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 1.1e-59 234.6 149 79.2
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 1.1e-59 234.6 142 81.7
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 1.5e-59 234.2 149 79.2
BcaB03g12090 Brassica carinata HOM05D002984 ORTHO05D003561 1.5e-59 234.2 149 79.2
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 1.5e-59 234.2 144 80.6
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 1.5e-59 234.2 144 80.6
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 1.9e-59 233.8 145 81.4
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 4.3e-59 232.6 146 82.2
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 5.6e-59 232.3 268 77.6
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 7.4e-59 231.9 142 81.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 7.4e-59 231.9 142 81.0
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 7.4e-59 231.9 309 67.6
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 1.3e-58 231.1 182 68.1
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 1.3e-58 231.1 177 72.9
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 1.6e-58 230.7 372 42.7
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 2.8e-58 229.9 180 70.0
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 4.8e-58 229.2 130 89.2
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 2.4e-57 226.9 166 71.7
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 6.9e-57 225.3 309 68.9
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 1.2e-56 224.6 170 71.8
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 2.2e-55 220.3 129 86.8
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 3.2e-54 216.5 165 71.5
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 1.6e-53 214.2 163 69.9
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 3.5e-53 213.0 167 67.7
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 1.0e-52 211.5 173 65.3
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 1.3e-52 211.1 296 66.9
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 2.3e-52 210.3 129 82.9
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 1.1e-51 208.0 128 78.9
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.6e-50 204.1 148 73.0
Dinv04490 Davidia involucrata HOM05D002984 ORTHO05D003561 1.4e-49 201.1 113 90.3
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 2.4e-49 200.3 361 58.4
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 3.1e-49 199.9 159 65.4
PSO017G3087 Papaver somniferum HOM05D002984 ORTHO05D003561 3.1e-49 199.9 165 65.5
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 5.3e-49 199.1 320 54.4
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 6.9e-49 198.7 131 74.8
Medtr5g054690 Medicago truncatula HOM05D002984 ORTHO05D003561 3.4e-48 196.4 127 74.0
CDE08G0495 Ceratophyllum demersum HOM05D002984 ORTHO05D003561 5.0e-47 192.6 275 53.8
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 9.3e-46 188.3 129 77.5
Psat7g129560 Pisum sativum HOM05D002984 ORTHO05D003561 1.3e-44 184.5 154 64.9
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 1.1e-43 181.4 138 66.7
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 3.3e-43 179.9 165 59.4
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 1.8e-41 174.1 138 70.3
Nitab4.5_0000672g0090 Nicotiana tabacum HOM05D002984 ORTHO05D003561 6.9e-41 172.2 189 53.4
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 6.9e-41 172.2 134 63.4
Lj2g0014050 Lotus japonicus HOM05D002984 ORTHO05D003561 1.2e-40 171.4 129 67.4
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 2.6e-40 170.2 201 50.7
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 5.9e-40 169.1 150 59.3
Zm00001eb115900 Zea mays HOM05D000554 ORTHO05D000860 2.2e-39 167.2 203 47.3
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 2.9e-39 166.8 149 61.1
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 2.9e-39 166.8 144 64.6
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 3.8e-39 166.4 129 70.5
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 8.5e-39 165.2 152 58.6
FvH4_5g01900 Fragaria vesca HOM05D002984 ORTHO05D003561 1.1e-38 164.9 177 55.9
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 2.5e-38 163.7 165 56.4
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 7.9e-37 158.7 138 65.9
HanXRQChr17g0552251 Helianthus annuus HOM05D002984 ORTHO05D003561 2.8e-34 150.2 150 55.3
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 2.6e-32 143.7 150 51.3
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.6e-32 143.7 150 51.3
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.7e-31 141.0 204 42.2
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.6e-29 134.4 122 64.8
FAN25G0819 Fragaria x ananassa HOM05D002984 ORTHO05D009683 3.6e-29 133.3 105 67.6
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.8e-28 131.0 169 45.0
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 1.1e-27 128.3 179 45.3
FAN13G3281 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.6e-27 127.1 150 52.7
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 2.2e-26 124.0 111 62.2
Medtr7g077950 Medicago truncatula HOM05D002984 ORTHO05D003561 2.2e-26 124.0 158 49.4
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 2.2e-26 124.0 114 61.4
AUR62002298 Chenopodium quinoa HOM05D002984 ORTHO05D003561 8.2e-26 122.1 133 54.9
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 2.4e-25 120.6 167 49.7
Solyc05g009710.4 Solanum lycopersicum HOM05D002984 ORTHO05D003561 7.0e-25 119.0 142 47.2
Sopen05g005530 Solanum pennellii HOM05D002984 ORTHO05D003561 2.0e-24 117.5 142 46.5
Lj2g0022832 Lotus japonicus HOM05D002984 ORTHO05D003561 3.5e-24 116.7 148 43.9
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 2.2e-23 114.0 124 51.6
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 2.9e-23 113.6 72 73.6
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 3.8e-23 113.2 79 69.6
SEGI_05160 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 5.0e-23 112.8 89 66.3
VMungo0464G0516 Vigna mungo HOM05D002984 ORTHO05D003561 2.5e-22 110.5 85 63.5
SMO356G0715 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 3.3e-19 100.1 162 40.7
SEGI_39906 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 2.2e-18 97.4 79 60.8
Sc04g0003680 Simmondsia chinensis HOM05D002984 ORTHO05D003561 1.8e-17 94.4 168 34.5
MBI15_g33904_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 9.1e-17 92.0 51 88.2
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 4.5e-16 89.7 54 88.9
ECA246G1507 Erigeron canadensis HOM05D002984 ORTHO05D003561 5.9e-16 89.4 132 41.7
QL10p023587 Quercus lobata HOM05D002984 ORTHO05D014229 1.5e-14 84.7 97 47.4
Peaxi162Scf00004g01518 Petunia axillaris HOM05D002984 ORTHO05D003561 4.0e-12 76.6 93 53.8
RcHm_v2.0_Chr7g0240991 Rosa chinensis HOM05D002984 ORTHO05D003561 5.2e-12 76.3 43 90.7
Nitab4.5_0000489g0040 Nicotiana tabacum HOM05D002984 ORTHO05D003561 5.7e-11 72.8 82 52.4
Actinidia39817 Actinidia chinensis HOM05D002984 ORTHO05D003561 7.5e-11 72.4 104 37.5
ECA246G2084 Erigeron canadensis HOM05D002984 ORTHO05D003561 7.5e-11 72.4 90 42.2
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 8.3e-10 68.9 71 50.7
Glyma.17G171600 Glycine max HOM05D013640 ORTHO05D014229 1.4e-09 68.2 126 31.7
FvH4_5g12601 Fragaria vesca HOM05D002984 ORTHO05D015666 3.1e-09 67.0 128 25.0
Psat2g101040 Pisum sativum HOM05D002984 ORTHO05D003561 3.1e-09 67.0 80 48.8
Glyma.02G139200 Glycine max HOM05D013640 ORTHO05D014229 4.1e-09 66.6 125 31.2
Glyma.02G139300 Glycine max HOM05D013640 ORTHO05D014229 4.1e-09 66.6 125 31.2
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 3.5e-08 63.5 128 32.8
Psat1g039440 Pisum sativum HOM05D002984 ORTHO05D022868 4.5e-08 63.2 152 27.0
Phvul.003G059200 Phaseolus vulgaris HOM05D013640 ORTHO05D014229 7.7e-08 62.4 125 30.4
Phvul.003G059300 Phaseolus vulgaris HOM05D013640 ORTHO05D014229 1.0e-07 62.0 126 30.2
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 1.0e-07 62.0 58 62.1
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.7e-07 61.2 74 52.7
Glyma.02G139432 Glycine max HOM05D013640 ORTHO05D014229 2.2e-07 60.8 125 27.2
Nitab4.5_0000597g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 2.2e-07 60.8 74 54.1
Medtr6g085080 Medicago truncatula HOM05D002984 ORTHO05D022868 5.0e-07 59.7 145 26.2
Medtr6g085130 Medicago truncatula HOM05D002984 ORTHO05D022868 2.5e-06 57.4 140 27.9
Medtr6g085100 Medicago truncatula HOM05D002984 ORTHO05D022868 9.5e-06 55.5 152 24.3


User provided reference genes

Program Settings