Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024952 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D110614 2.0e-77 292.4 149 100.0
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 8.7e-12 74.3 173 35.3
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 8.7e-12 74.3 63 66.7
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 1.5e-11 73.6 97 48.5
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 3.3e-11 72.4 89 53.9
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 4.3e-11 72.0 67 62.7
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 9.6e-11 70.9 76 57.9
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 9.6e-11 70.9 76 57.9
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 1.3e-10 70.5 69 62.3
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.3e-10 70.5 76 57.9
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 2.1e-10 69.7 82 51.2
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 2.1e-10 69.7 63 63.5
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.7e-10 68.9 98 45.9
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 8.1e-10 67.8 72 56.9
Sc03g0006100 Simmondsia chinensis HOM05D001473 ORTHO05D003934 8.1e-10 67.8 117 44.4
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.1e-09 67.4 67 58.2
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.8e-09 66.6 76 53.9
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 3.1e-09 65.9 62 64.5
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 4.0e-09 65.5 89 49.4
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 5.3e-09 65.1 63 60.3
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 5.3e-09 65.1 68 58.8
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 5.3e-09 65.1 68 58.8
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 5.3e-09 65.1 68 58.8
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 6.9e-09 64.7 72 58.3
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 9.0e-09 64.3 76 52.6
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.2e-08 63.9 67 53.7
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.5e-08 63.5 82 48.8
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 1.5e-08 63.5 60 58.3
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 1.5e-08 63.5 63 57.1
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 2.0e-08 63.2 67 56.7
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 3.4e-08 62.4 68 55.9
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 3.4e-08 62.4 80 51.2
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 3.4e-08 62.4 76 51.3
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 4.5e-08 62.0 67 56.7
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 4.5e-08 62.0 79 48.1
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 5.8e-08 61.6 89 47.2
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 5.8e-08 61.6 89 47.2
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 7.6e-08 61.2 56 60.7
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 9.9e-08 60.8 63 58.7
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 1.3e-07 60.5 63 55.6
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 1.7e-07 60.1 63 57.1
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 1.7e-07 60.1 63 57.1
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 1.7e-07 60.1 79 46.8
Sc03g0006690 Simmondsia chinensis HOM05D001473 ORTHO05D003934 2.2e-07 59.7 71 56.3
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 4.9e-07 58.5 63 54.0
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 6.4e-07 58.2 182 33.0
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 8.4e-07 57.8 57 57.9
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.1e-06 57.4 56 60.7
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 1.1e-06 57.4 56 60.7
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 1.4e-06 57.0 59 55.9
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.4e-06 57.0 55 60.0
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.4e-06 57.0 55 60.0
CsaV3_1G045340 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.4e-06 57.0 63 54.0
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.4e-06 57.0 63 54.0
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.4e-06 57.0 56 58.9
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 1.9e-06 56.6 89 44.9
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 2.4e-06 56.2 61 57.4
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 3.2e-06 55.8 60 56.7
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 3.2e-06 55.8 60 56.7
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 3.2e-06 55.8 64 54.7
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 4.2e-06 55.5 45 64.4
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 4.2e-06 55.5 62 56.5
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 7.1e-06 54.7 57 49.1
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 7.1e-06 54.7 60 53.3
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 7.1e-06 54.7 60 53.3
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 7.1e-06 54.7 52 59.6
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 7.1e-06 54.7 81 43.2


User provided reference genes

Program Settings