Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 2407.1 1245 100.0
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1899.0 1260 79.0
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1775.4 1273 73.8
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 1764.2 1264 73.6
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1749.9 1266 73.4
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1540.4 1262 66.3
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1501.9 1260 64.4
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1491.5 1277 63.0
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1491.1 1261 63.6
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1483.4 1259 63.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1444.5 1253 61.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1435.2 1262 60.5
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1431.0 1266 61.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1420.2 1270 61.2
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1414.1 1254 59.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1401.7 1253 59.3
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1401.3 1253 59.3
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1400.2 1280 59.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1396.3 1253 59.0
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1390.2 1266 60.2
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1388.2 1217 62.4
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1387.1 1263 59.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1379.8 1253 59.6
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1370.5 1263 57.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1366.3 1253 58.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1347.4 1262 58.0
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1340.9 1299 56.5
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1333.2 1260 56.5
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1322.0 1266 57.5
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1320.8 1267 57.5
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1317.0 1266 57.3
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1315.8 1263 58.4
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1310.0 1260 57.9
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1295.4 1259 56.7
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1293.1 1270 56.2
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1286.9 1260 55.6
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1281.2 1260 56.0
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1279.6 1260 56.0
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1278.5 1253 56.3
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1277.3 1261 55.5
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1273.1 1269 55.6
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1270.8 1259 56.8
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1270.8 1269 54.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1269.6 1271 55.5
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1265.8 1267 55.1
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1260.7 1253 55.5
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1260.7 1260 54.8
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1251.1 1368 52.3
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1251.1 1263 55.7
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1243.4 1260 53.7
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1236.1 1480 49.2
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1219.1 1280 53.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1218.4 1261 53.8
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1216.1 1271 54.0
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1204.9 1276 53.4
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1191.8 1261 53.0
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1181.0 1258 51.8
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1167.1 1268 51.8
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1164.1 1221 53.0
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1161.0 1294 51.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1149.4 1230 52.5
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1149.4 1255 51.6
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1147.5 1260 50.9
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1133.2 1262 50.8
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1132.1 1237 52.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1129.0 1251 52.2
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1120.1 1262 50.3
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1109.4 1254 50.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1109.4 1254 50.8
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1106.3 1257 50.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1105.5 1257 50.8
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1100.9 1254 50.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1100.5 1254 50.8
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1094.7 1254 50.0
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1089.3 1093 54.7
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1088.9 1258 49.9
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1088.9 1255 49.9
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1087.0 1281 49.7
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 3.2e-309 1065.4 1263 49.6
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 9.6e-306 1053.9 1253 49.8
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 3.4e-303 1045.4 1281 48.3
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 1.3e-281 973.8 1275 44.1
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 6.9e-280 968.0 1232 47.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 6.7e-275 951.4 1242 46.7
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 7.7e-271 937.9 1351 43.4
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 1.2e-260 904.0 1019 49.6
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 1.3e-217 761.1 1269 39.0
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.3e-213 745.3 746 53.6
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 2.9e-209 733.4 1269 38.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 5.1e-198 696.0 738 51.6
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 3.8e-169 600.1 792 48.1
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 6.1e-159 566.2 538 58.6
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.4e-155 555.1 1332 31.8
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 7.0e-147 526.2 1326 29.0
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 7.7e-146 522.7 759 41.5
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 2.4e-131 474.6 420 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.8e-129 467.2 1295 27.9
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.1e-127 461.5 392 61.7
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-122 445.7 613 43.7
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.1e-111 408.3 728 36.7
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.7e-106 391.3 660 38.9
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.2e-95 355.9 638 36.5
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.4e-94 351.7 1440 25.1
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.0e-60 240.0 479 31.7
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 3.3e-56 224.9 208 57.2
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.0e-52 213.4 135 77.8
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.5e-51 208.8 184 61.4
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.5e-43 181.0 343 35.0
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.7e-40 171.0 704 23.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.7e-31 142.9 297 35.7
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 8.3e-31 140.6 130 53.1
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 7.0e-30 137.5 196 41.3
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.7e-23 116.3 143 44.8
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.2e-23 115.9 695 22.3
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 2.0e-21 109.4 110 51.8
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 2.8e-18 99.0 158 38.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 8.0e-18 97.4 115 49.6
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 8.0e-18 97.4 128 46.9
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.8e-17 96.3 64 71.9
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.3e-15 87.4 196 31.1
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 1.1e-14 87.0 80 52.5
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 9.2e-14 84.0 53 71.7
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.2e-13 83.6 46 84.8
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 9.5e-11 73.9 84 45.2
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 4.9e-07 61.6 67 47.8
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 1.4e-06 60.1 105 39.0


User provided reference genes

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