Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.1e-98 362.5 195 100.0
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.9e-91 339.3 181 100.0
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.5e-69 265.4 184 78.8
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.1e-67 260.4 184 79.9
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 9.8e-64 247.3 209 66.0
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 3.7e-63 245.4 186 74.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 4.9e-63 245.0 182 74.7
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 4.6e-61 238.4 184 72.8
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.7e-60 236.5 173 74.6
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 6.6e-60 234.6 173 74.0
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.5e-59 232.6 183 72.1
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 4.3e-59 231.9 173 72.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 9.5e-59 230.7 172 73.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.8e-57 226.5 176 72.7
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 2.3e-57 226.1 179 65.9
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 8.9e-57 224.2 187 68.4
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.2e-56 223.8 189 67.7
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.5e-56 223.4 179 65.9
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.7e-55 219.9 165 72.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.2e-54 215.7 184 65.8
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 4.1e-54 215.3 188 64.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.2e-53 213.8 193 64.8
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.7e-53 212.6 177 68.9
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.7e-53 212.6 288 49.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 3.5e-53 212.2 184 67.4
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 4.6e-53 211.8 188 66.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.7e-52 209.9 185 66.5
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.3e-52 209.5 187 64.7
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.0e-52 209.1 185 66.5
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 5.0e-52 208.4 170 66.5
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-51 207.2 185 66.5
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.5e-51 206.8 181 67.4
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.9e-51 206.5 207 58.5
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 3.3e-51 205.7 209 59.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.8e-50 202.6 189 64.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.8e-50 202.6 185 60.5
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.7e-50 201.8 187 63.1
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.1e-49 200.7 187 64.2
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.4e-49 200.3 175 64.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.8e-49 199.9 187 63.6
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.8e-49 199.9 199 59.8
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 2.3e-49 199.5 190 62.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 3.1e-49 199.1 184 63.0
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 8.9e-49 197.6 194 58.8
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 8.9e-49 197.6 179 63.7
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.2e-48 197.2 173 65.9
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.2e-48 197.2 188 64.9
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.2e-48 197.2 180 64.4
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.6e-48 196.1 183 63.9
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.3e-47 193.7 186 60.2
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.2e-47 193.0 196 61.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.9e-47 192.6 186 60.8
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 8.3e-47 191.0 186 60.2
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 1.4e-46 190.3 180 60.6
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 7.8e-45 184.5 231 50.6
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.9e-44 182.2 171 60.2
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 3.9e-44 182.2 179 61.5
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.1e-44 181.8 171 60.2
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.5e-43 180.3 178 61.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.9e-43 179.9 178 61.8
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.9e-43 179.9 186 58.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.2e-42 177.2 186 56.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.6e-42 176.8 188 58.0
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.7e-42 175.3 181 60.8
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.7e-42 175.3 184 59.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 8.1e-42 174.5 186 59.1
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 8.1e-42 174.5 186 58.1
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.8e-41 173.3 182 61.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.8e-41 173.3 183 57.9
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.0e-41 172.2 187 59.9
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 4.0e-41 172.2 187 59.9
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.5e-40 170.2 186 59.1
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.4e-40 169.1 190 57.9
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.2e-39 166.4 180 59.4
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 3.8e-39 165.6 174 57.5
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 8.4e-39 164.5 185 56.2
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.1e-38 164.1 167 57.5
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 3.2e-38 162.5 189 56.1
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 4.1e-38 162.2 188 53.2
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.4e-38 161.8 193 53.4
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 7.1e-38 161.4 189 54.0
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 9.2e-38 161.0 191 55.0
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 2.1e-37 159.8 183 55.2
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 7.8e-37 157.9 173 57.2
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.0e-36 157.5 190 53.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 2.3e-36 156.4 193 54.4
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 8.6e-36 154.5 171 57.9
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.1e-35 154.1 190 54.2
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.5e-35 153.7 163 58.3
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.5e-35 152.9 177 55.9
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.3e-35 152.1 192 53.1
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 4.3e-35 152.1 193 49.7
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 4.3e-35 152.1 171 57.3
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 7.3e-35 151.4 164 55.5
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.8e-34 149.4 190 53.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.8e-33 146.7 186 52.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 3.1e-33 146.0 186 52.2
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 4.0e-33 145.6 186 51.6
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 6.9e-33 144.8 186 49.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 6.9e-33 144.8 176 51.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 6.9e-33 144.8 176 51.7
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 2.6e-32 142.9 178 50.0
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 4.4e-32 142.1 177 53.1
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 4.9e-31 138.7 182 52.2
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 8.4e-31 137.9 163 55.2
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.9e-30 136.7 175 50.3
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.9e-30 136.7 134 61.2
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.2e-30 136.0 177 51.4
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 5.4e-30 135.2 182 51.1
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 5.4e-30 135.2 182 51.1
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.7e-29 132.9 171 53.8
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 3.5e-29 132.5 84 82.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 7.8e-29 131.3 174 50.6
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.0e-28 131.0 175 52.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.6e-26 123.6 177 45.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.6e-26 123.6 177 45.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.8e-26 122.9 179 48.0
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.8e-26 122.9 179 48.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.4e-25 119.8 191 47.1
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-25 119.8 191 47.1
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.4e-25 119.8 191 47.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 2.4e-25 119.8 168 48.2
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 2.4e-25 119.8 146 54.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 5.3e-25 118.6 190 44.7
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.2e-24 117.5 170 45.9
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.6e-21 105.5 272 35.7
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.0e-20 104.4 114 57.9
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 5.1e-20 102.1 115 54.8
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 8.7e-20 101.3 111 55.0
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 3.7e-18 95.9 113 52.2
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.8e-17 93.6 212 36.8
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 2.4e-17 93.2 167 44.9
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 3.8e-15 85.9 97 52.6
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 8.4e-15 84.7 117 50.4
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 1.6e-13 80.5 214 37.4
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.7e-13 79.7 67 62.7
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.3e-12 76.6 82 61.0
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 9.6e-11 71.2 99 47.5
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.8e-09 67.0 39 82.1
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 3.4e-08 62.8 54 64.8
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 3.4e-08 62.8 54 64.8
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 2.2e-07 60.1 83 49.4
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 1.1e-06 57.8 82 41.5
CAN.G1352.26 Capsicum annuum HOM05D002196 ORTHO05D011452 1.4e-06 57.4 69 52.2


User provided reference genes

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