Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1654.8 848 100.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1456.0 852 86.7
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1440.6 850 86.1
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1403.3 853 84.4
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1384.4 849 82.0
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1368.2 850 83.2
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1348.6 845 81.7
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1328.5 846 79.1
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1328.2 838 78.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1311.2 844 78.7
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1308.5 832 79.0
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1307.7 895 75.4
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1304.7 883 76.6
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1303.1 865 78.2
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1302.7 869 77.7
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1302.3 869 77.3
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1300.8 870 77.5
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1300.8 817 80.4
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1298.9 816 80.1
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1298.5 829 79.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1295.4 830 79.0
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1295.0 819 80.1
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1294.6 866 76.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1293.5 872 76.5
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1292.7 872 76.4
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1292.7 873 75.7
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1290.4 891 75.0
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1287.3 842 78.3
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1285.0 874 76.7
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1285.0 873 75.9
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1283.9 876 75.8
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1280.0 879 75.4
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1278.1 935 71.0
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1276.2 854 76.5
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1276.2 848 77.9
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1273.5 857 76.1
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1272.3 887 75.6
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1272.3 847 76.2
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1271.5 857 75.6
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1270.8 917 72.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1269.6 849 78.2
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1269.2 870 75.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1267.7 858 75.8
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1266.1 882 74.1
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 847 76.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1263.4 817 77.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1256.1 878 74.4
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1254.6 835 76.6
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1254.6 838 76.0
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1250.0 874 74.0
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1249.2 870 74.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1248.4 902 72.2
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1248.0 915 71.4
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 873 74.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1246.1 822 77.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1245.3 877 73.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 878 72.9
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 858 74.4
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 879 73.7
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1240.3 914 71.3
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1239.9 902 72.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1238.4 878 73.1
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1236.1 870 73.6
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1235.7 859 73.6
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1234.9 920 70.1
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1234.2 879 72.7
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1232.2 887 74.1
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 878 73.0
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1229.9 889 72.3
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1229.2 869 73.1
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1226.1 902 73.1
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 880 72.6
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 902 73.1
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 825 76.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1223.8 890 71.3
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 902 72.9
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 967 68.5
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 887 73.5
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 870 72.6
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 921 69.3
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 930 69.4
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 817 76.1
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1208.7 871 72.4
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1206.8 873 71.9
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1206.8 866 72.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1203.3 927 67.5
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1202.2 875 70.5
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 869 73.3
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 882 71.8
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1197.6 882 71.7
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 882 71.0
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1192.9 875 71.3
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 898 70.3
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 1010 63.5
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 814 75.7
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1180.6 806 75.2
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1177.9 848 71.5
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 919 67.0
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 892 70.6
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1172.1 850 72.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 872 69.0
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 880 69.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 880 69.4
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 839 71.6
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1152.1 903 68.3
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 843 69.9
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1125.2 842 67.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1111.7 850 68.0
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1109.0 736 74.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 851 65.8
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1098.6 826 68.0
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.0e-303 1044.6 715 73.8
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.5e-299 1031.6 699 77.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.9e-298 1028.5 901 63.2
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.7e-291 1005.4 705 72.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.4e-284 983.0 718 73.7
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.0e-278 962.6 596 79.2
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.9e-276 956.1 960 58.0
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 2.1e-275 952.6 855 63.6
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 9.6e-273 943.7 854 56.4
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 9.6e-265 917.1 505 86.7
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.6e-259 899.8 907 54.4
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.2e-253 879.4 833 55.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.0e-245 854.0 687 65.8
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.3e-194 683.3 617 60.8
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 7.0e-183 645.2 515 69.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-176 624.4 384 76.8
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.3e-176 624.4 465 70.3
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.9e-176 623.2 371 78.4
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.6e-171 607.4 352 82.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.9e-170 601.7 341 81.2
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-165 587.8 361 76.5
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.8e-163 580.1 548 62.0
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 3.2e-143 513.5 877 38.1
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.7e-142 510.4 699 43.6
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 8.1e-139 498.8 984 36.6
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 4.6e-126 456.4 305 73.8
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 7.4e-124 449.1 597 47.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-115 421.8 460 57.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 3.1e-114 417.2 482 54.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 3.6e-110 403.7 297 67.7
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.4e-105 387.1 1019 30.9
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.9e-103 381.3 332 69.9
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 5.7e-76 290.0 165 83.6
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 3.5e-57 227.6 330 42.7
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 8.6e-48 196.4 123 90.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 2.0e-44 185.3 104 84.6
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.0e-40 171.4 107 79.4
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.4e-37 161.8 117 70.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-36 159.5 107 67.3
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.0e-24 119.8 98 74.5
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 2.6e-20 105.1 83 65.1
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.4e-20 104.8 77 64.9
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.8e-19 101.3 61 77.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-13 82.4 91 51.6
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 6.9e-13 80.5 57 66.7
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.2e-12 79.7 69 53.6
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 4.5e-12 77.8 91 50.5
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.8e-12 77.4 45 77.8
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.1e-10 73.2 53 73.6
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 3.5e-09 68.2 58 55.2
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 6.7e-08 63.9 40 65.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.1e-07 63.2 52 61.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.6e-06 59.3 47 59.6


User provided reference genes

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